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The map label for this gene is yqgF [C]

Identifier: 94984533

GI number: 94984533

Start: 434566

End: 435264

Strand: Reverse

Name: yqgF [C]

Synonym: Dgeo_0425

Alternate gene names: 94984533

Gene position: 435264-434566 (Counterclockwise)

Preceding gene: 94984534

Following gene: 94984532

Centisome position: 17.64

GC content: 66.09

Gene sequence:

>699_bases
ATGGGTTCTTCATGGCTTCCTTGCTGGGCGTCCAGTGAGTGCGGCGAAGTCCAATACCAGCTCCTCCCGTTCTTTCTCAA
AGAACGTCCGGTAACGGTCCAGAGTCCGGTCCAGAGTCAAGGAAGCGCGGGCGTGCCCCACGTGGGCGCTCATCACCTCG
ACAGGCCCTCGTCCACCCACTACCCGAGGCCGCTTCACTCAAGTCCTCAACGGGGTTTTTCATCGACCAGAGATCCAGCT
TGGCTTCAGCCCCCAACCGCCGCTCTTCCTTCGCTACACTCGCTTCCGATGAACGCCTCTGCTTCCCCCGTCATCCTGGC
GTTGGATGTGAGCAAATCGCGCATCGGCTTTGCGGTGAGCGCGGGCCAATTGGCCTTCGGGCGGGGCAGCGTGGCCAGGA
AGCGGTTGCCCCTTGACCTCAAGGCCGTGCGGCTGAAGGTGGAGGAGACGGGCGCGGAGCTGCTGCTGCTGGGGCTGCCC
CTGCGCACGGACGGTGCCCACAGCCCCAGCGCCGACCGCGTGCGGGCCTTTGGGAAGATCCTCGCGGACAAGGGCTACCG
TGTCGCCTACCAGGATGAGCGCTTTACCACGCAGCGCGCCCGCGCCCTGGGCACCCGCGACGAAGACGAGGCAGCGGCGG
TGCAGATTCTGGAACTGTACCTGCTGGGCCGCGACGGCGCGGGCCGGCCGGAGACCTAG

Upstream 100 bases:

>100_bases
CCTGCCGAGCCAGATAAAACCTCGTTCCAGACGAGGTTTTTCTTTTTTGTATTCCGGCTCAGAGCGTGCCCAACTGCCCT
TTGTGCCCAACGCGTGCCCA

Downstream 100 bases:

>100_bases
ACCGTACGTTGAAGCTACGTTGAAGCATGCCCAGGAGGAGCGGTTCTGGGTGACATCTTCCCAACCTCTGGGGTGCCGCT
CTAGCCGGCAGAGTGGCTAG

Product: Holliday junction resolvase YqgF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MGSSWLPCWASSECGEVQYQLLPFFLKERPVTVQSPVQSQGSAGVPHVGAHHLDRPSSTHYPRPLHSSPQRGFSSTRDPA
WLQPPTAALPSLHSLPMNASASPVILALDVSKSRIGFAVSAGQLAFGRGSVARKRLPLDLKAVRLKVEETGAELLLLGLP
LRTDGAHSPSADRVRAFGKILADKGYRVAYQDERFTTQRARALGTRDEDEAAAVQILELYLLGRDGAGRPET

Sequences:

>Translated_232_residues
MGSSWLPCWASSECGEVQYQLLPFFLKERPVTVQSPVQSQGSAGVPHVGAHHLDRPSSTHYPRPLHSSPQRGFSSTRDPA
WLQPPTAALPSLHSLPMNASASPVILALDVSKSRIGFAVSAGQLAFGRGSVARKRLPLDLKAVRLKVEETGAELLLLGLP
LRTDGAHSPSADRVRAFGKILADKGYRVAYQDERFTTQRARALGTRDEDEAAAVQILELYLLGRDGAGRPET
>Mature_231_residues
GSSWLPCWASSECGEVQYQLLPFFLKERPVTVQSPVQSQGSAGVPHVGAHHLDRPSSTHYPRPLHSSPQRGFSSTRDPAW
LQPPTAALPSLHSLPMNASASPVILALDVSKSRIGFAVSAGQLAFGRGSVARKRLPLDLKAVRLKVEETGAELLLLGLPL
RTDGAHSPSADRVRAFGKILADKGYRVAYQDERFTTQRARALGTRDEDEAAAVQILELYLLGRDGAGRPET

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 25095; Mature: 24964

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSSWLPCWASSECGEVQYQLLPFFLKERPVTVQSPVQSQGSAGVPHVGAHHLDRPSSTH
CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCHHCCCCCCCC
YPRPLHSSPQRGFSSTRDPAWLQPPTAALPSLHSLPMNASASPVILALDVSKSRIGFAVS
CCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHCCCCCCCCCCEEEEEECCCCCCEEEEE
AGQLAFGRGSVARKRLPLDLKAVRLKVEETGAELLLLGLPLRTDGAHSPSADRVRAFGKI
CCCEEECCCCHHHHCCCCCEEHEEEEEECCCCEEEEEECCCCCCCCCCCCHHHHHHHHHH
LADKGYRVAYQDERFTTQRARALGTRDEDEAAAVQILELYLLGRDGAGRPET
HHCCCCEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHEECCCCCCCCCC
>Mature Secondary Structure 
GSSWLPCWASSECGEVQYQLLPFFLKERPVTVQSPVQSQGSAGVPHVGAHHLDRPSSTH
CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCHHCCCCCCCC
YPRPLHSSPQRGFSSTRDPAWLQPPTAALPSLHSLPMNASASPVILALDVSKSRIGFAVS
CCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHCCCCCCCCCCEEEEEECCCCCCEEEEE
AGQLAFGRGSVARKRLPLDLKAVRLKVEETGAELLLLGLPLRTDGAHSPSADRVRAFGKI
CCCEEECCCCHHHHCCCCCEEHEEEEEECCCCEEEEEECCCCCCCCCCCCHHHHHHHHHH
LADKGYRVAYQDERFTTQRARALGTRDEDEAAAVQILELYLLGRDGAGRPET
HHCCCCEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10567266 [H]