| Definition | Deinococcus geothermalis DSM 11300, complete genome. |
|---|---|
| Accession | NC_008025 |
| Length | 2,467,205 |
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The map label for this gene is regX3 [H]
Identifier: 94984238
GI number: 94984238
Start: 119442
End: 120131
Strand: Reverse
Name: regX3 [H]
Synonym: Dgeo_0130
Alternate gene names: 94984238
Gene position: 120131-119442 (Counterclockwise)
Preceding gene: 94984239
Following gene: 94984237
Centisome position: 4.87
GC content: 70.72
Gene sequence:
>690_bases ATGAGCCACGTGGTCGTCATCGAGGACGAGAGCACCGTGCGGGAGGTGCTGCGCTTTCATCTGGAGCGGGCCGGGCTGCG GGTGAGCGCGCTGGAATCGGTGCAGGGCGCCCAGGAGACGCTGCGGGGCGCCGACGCGCTGGTGCTGGACTGGATGCTGC CGGGCGAGAGCGGCCTCGCGTATCTGCGCCGGCTGCGCGGGGATCCGGAGCTGCGCCGCCTGCCCGTGCTGATGCTTACT GCTCGCGCGGCGGAGGCCGAGCGCGTGGAGGGCCTCGAAAGCGGCGCCGACGACTACCTCACCAAGCCCTTCAGCGCGGC GGAACTGGTCGCCCGCGTGCGGGCCTTGCTGCGCCGTGCCCAGCCTGACACGCCGCAACAGCTCAGCCACGGTCCCCTCA GCATGGACCTGGGCGCGGCCGAGGCGCGGCTGGCTGGCATTCGGCTGCACCTCACTCGGCGCGAATTCGACCTGCTGGCC TTTCTGACCCAGAACGCCGGGCGGGTGTACACGCGCACCGAACTGCTCGACCGAGTGTGGGGCGCGGATTTCCTGGGCGG CGAGCGCACCGTGGACCAGCATGTCACGCAACTGCGCGCGCATCTGGGAGACGATCCAGCTCGGCCCCGCTTTCTGGAAA CGGTGCGCGGCAAGGGATACCGAATGCGGCCCTGGGAGGGGGAGAACTGA
Upstream 100 bases:
>100_bases GACGCCAAACCAAACGGTGTAGCGGGCACCGGAGGGAGACGGTGAAGGGGGAAGCGCTGTCCTGACATTCCCCTGACTGC CCGTCGCAGAATAAACCTCA
Downstream 100 bases:
>100_bases TGCCTGAGGTGCTCTCTCCCCGCAAAGACGCCTGGCTGGACACGTTGCCACAGGCGGTGCTGCTGTTCGAGGTGGGACAG GACGCGCTGACCGTGACCCG
Product: two component transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 229; Mature: 228
Protein sequence:
>229_residues MSHVVVIEDESTVREVLRFHLERAGLRVSALESVQGAQETLRGADALVLDWMLPGESGLAYLRRLRGDPELRRLPVLMLT ARAAEAERVEGLESGADDYLTKPFSAAELVARVRALLRRAQPDTPQQLSHGPLSMDLGAAEARLAGIRLHLTRREFDLLA FLTQNAGRVYTRTELLDRVWGADFLGGERTVDQHVTQLRAHLGDDPARPRFLETVRGKGYRMRPWEGEN
Sequences:
>Translated_229_residues MSHVVVIEDESTVREVLRFHLERAGLRVSALESVQGAQETLRGADALVLDWMLPGESGLAYLRRLRGDPELRRLPVLMLT ARAAEAERVEGLESGADDYLTKPFSAAELVARVRALLRRAQPDTPQQLSHGPLSMDLGAAEARLAGIRLHLTRREFDLLA FLTQNAGRVYTRTELLDRVWGADFLGGERTVDQHVTQLRAHLGDDPARPRFLETVRGKGYRMRPWEGEN >Mature_228_residues SHVVVIEDESTVREVLRFHLERAGLRVSALESVQGAQETLRGADALVLDWMLPGESGLAYLRRLRGDPELRRLPVLMLTA RAAEAERVEGLESGADDYLTKPFSAAELVARVRALLRRAQPDTPQQLSHGPLSMDLGAAEARLAGIRLHLTRREFDLLAF LTQNAGRVYTRTELLDRVWGADFLGGERTVDQHVTQLRAHLGDDPARPRFLETVRGKGYRMRPWEGEN
Specific function: Part of the two-component regulatory system senX3/regX3. Once phosphorylated by senX3, activates the expression of several operons/genes involved in phosphate assimilation and metabolism, such as pstSCAB, phnDCE, and phoA [H]
COG id: COG0745
COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1786599, Length=222, Percent_Identity=40.990990990991, Blast_Score=163, Evalue=1e-41, Organism=Escherichia coli, GI1786911, Length=226, Percent_Identity=38.9380530973451, Blast_Score=142, Evalue=2e-35, Organism=Escherichia coli, GI1789809, Length=231, Percent_Identity=34.6320346320346, Blast_Score=134, Evalue=4e-33, Organism=Escherichia coli, GI1789402, Length=221, Percent_Identity=40.2714932126697, Blast_Score=134, Evalue=7e-33, Organism=Escherichia coli, GI1788394, Length=229, Percent_Identity=35.3711790393013, Blast_Score=132, Evalue=2e-32, Organism=Escherichia coli, GI1786784, Length=228, Percent_Identity=37.280701754386, Blast_Score=130, Evalue=6e-32, Organism=Escherichia coli, GI87082012, Length=219, Percent_Identity=38.8127853881278, Blast_Score=126, Evalue=1e-30, Organism=Escherichia coli, GI2367329, Length=231, Percent_Identity=37.6623376623377, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI1790860, Length=225, Percent_Identity=39.1111111111111, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI1790552, Length=221, Percent_Identity=34.841628959276, Blast_Score=114, Evalue=8e-27, Organism=Escherichia coli, GI1787375, Length=219, Percent_Identity=33.3333333333333, Blast_Score=110, Evalue=6e-26, Organism=Escherichia coli, GI1790863, Length=233, Percent_Identity=32.1888412017167, Blast_Score=110, Evalue=6e-26, Organism=Escherichia coli, GI1787229, Length=232, Percent_Identity=33.1896551724138, Blast_Score=97, Evalue=7e-22, Organism=Escherichia coli, GI145693140, Length=242, Percent_Identity=30.5785123966942, Blast_Score=95, Evalue=4e-21, Organism=Escherichia coli, GI1788191, Length=123, Percent_Identity=30.8943089430894, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1790299, Length=143, Percent_Identity=34.2657342657343, Blast_Score=64, Evalue=6e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011006 - InterPro: IPR001867 - InterPro: IPR001789 - InterPro: IPR011991 [H]
Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]
EC number: NA
Molecular weight: Translated: 25682; Mature: 25550
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: PS50110 RESPONSE_REGULATORY
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHVVVIEDESTVREVLRFHLERAGLRVSALESVQGAQETLRGADALVLDWMLPGESGLA CCCEEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHH YLRRLRGDPELRRLPVLMLTARAAEAERVEGLESGADDYLTKPFSAAELVARVRALLRRA HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHC QPDTPQQLSHGPLSMDLGAAEARLAGIRLHLTRREFDLLAFLTQNAGRVYTRTELLDRVW CCCCHHHHCCCCCCCCCCHHHHHHHHEEEEEEHHHHHHHHHHHCCCCCCHHHHHHHHHHH GADFLGGERTVDQHVTQLRAHLGDDPARPRFLETVRGKGYRMRPWEGEN CCHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCEECCCCCCCC >Mature Secondary Structure SHVVVIEDESTVREVLRFHLERAGLRVSALESVQGAQETLRGADALVLDWMLPGESGLA CCEEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHH YLRRLRGDPELRRLPVLMLTARAAEAERVEGLESGADDYLTKPFSAAELVARVRALLRRA HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHC QPDTPQQLSHGPLSMDLGAAEARLAGIRLHLTRREFDLLAFLTQNAGRVYTRTELLDRVW CCCCHHHHCCCCCCCCCCHHHHHHHHEEEEEEHHHHHHHHHHHCCCCCCHHHHHHHHHHH GADFLGGERTVDQHVTQLRAHLGDDPARPRFLETVRGKGYRMRPWEGEN CCHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA