Click here to switch to the map view.

The map label for this gene is yfjP [H]

Identifier: 94984215

GI number: 94984215

Start: 101097

End: 101747

Strand: Reverse

Name: yfjP [H]

Synonym: Dgeo_0107

Alternate gene names: 94984215

Gene position: 101747-101097 (Counterclockwise)

Preceding gene: 94984217

Following gene: 94984213

Centisome position: 4.12

GC content: 72.96

Gene sequence:

>651_bases
ATGCCGCCCGTCCTCCCCGCGTCCCTGCCGCTCACCGACCATGCGGCGGCGCTGGCCTGGCTCGCGCGCGACCCGGCACT
GGCGGACGTGCTGGCCCGTACCCCGCCCCTTCCCGTGCTGACGCCGACCCCGCACCCTTTCGGGACGCTGGTGCGCAGCG
TGGTGGGGCAGCAGCTCTCGACCCAGGCCGCGGCCAGCATCGCCGCCCGGCTAGAAGACGCGCTGGGCGGCGTCGAGCCG
GAAGCGTTGCTGCGAACCCCGCCCGACAAGTTGCGCGCGCTGGGCCTCTCTTGGGCGAAGGTTCGTACGGTCCGCGCCCT
GGCGGACGCCGCGCTGAGCGGCCAGGTGGATTTCGCGCACCTCTCCAGCCTGCCGGATGCGGCGGTGATCGACGCCCTCA
CCCCGCTGCCCGGCATCGGGCGCTGGACCGTGGAGATGTTTCTGATGTTTGGACTCGCTCGGCCTGACGTGTTCAGCTTC
GGGGATCTGGTGCTGCGGCAGGGGTTGAGCCGCCTCTACCCGCACGTGGCGCCCGGCAGCGCACAGGCAGCGGTGGTGGC
AGCGTGGTCTCCCTACCGCACGCTCGCCGCCCGCGTGCTGTGGGCAGAACGGCGCACAGACAAGGAGCGCGGCGCCAGCG
ACCCGCTCTAG

Upstream 100 bases:

>100_bases
CAGGTACACGCGAAATGGGCGCAAAGTTTCTTCACGTTCCGTGCAGCCCACCTCATGCGTGGCCCGTGCGCATGCGCTCC
AATGACTCCCCGTGCCCGAC

Downstream 100 bases:

>100_bases
CGGCTCCGCCAGCTATTCCTCCTCCAAATACCGTTTCAGCTCATCGAGCCGCACCACCATCGGCGTGCGCGCCCGGCTGA
TCGCACCTTCCTGCTTGAGC

Product: HhH-GPD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 215

Protein sequence:

>216_residues
MPPVLPASLPLTDHAAALAWLARDPALADVLARTPPLPVLTPTPHPFGTLVRSVVGQQLSTQAAASIAARLEDALGGVEP
EALLRTPPDKLRALGLSWAKVRTVRALADAALSGQVDFAHLSSLPDAAVIDALTPLPGIGRWTVEMFLMFGLARPDVFSF
GDLVLRQGLSRLYPHVAPGSAQAAVVAAWSPYRTLAARVLWAERRTDKERGASDPL

Sequences:

>Translated_216_residues
MPPVLPASLPLTDHAAALAWLARDPALADVLARTPPLPVLTPTPHPFGTLVRSVVGQQLSTQAAASIAARLEDALGGVEP
EALLRTPPDKLRALGLSWAKVRTVRALADAALSGQVDFAHLSSLPDAAVIDALTPLPGIGRWTVEMFLMFGLARPDVFSF
GDLVLRQGLSRLYPHVAPGSAQAAVVAAWSPYRTLAARVLWAERRTDKERGASDPL
>Mature_215_residues
PPVLPASLPLTDHAAALAWLARDPALADVLARTPPLPVLTPTPHPFGTLVRSVVGQQLSTQAAASIAARLEDALGGVEPE
ALLRTPPDKLRALGLSWAKVRTVRALADAALSGQVDFAHLSSLPDAAVIDALTPLPGIGRWTVEMFLMFGLARPDVFSFG
DLVLRQGLSRLYPHVAPGSAQAAVVAAWSPYRTLAARVLWAERRTDKERGASDPL

Specific function: Hydrolysis of the deoxyribose N-glycosidic bond to excise 3-methyladenine, 3-methylguanine, 7-methylguanine, O2- methylthymine, and O2-methylcytosine from the damaged DNA polymer formed by alkylation lesions [H]

COG id: COG0122

COG function: function code L; 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the alkylbase DNA glycosidase alkA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011257
- InterPro:   IPR003265
- InterPro:   IPR003583
- InterPro:   IPR023170 [H]

Pfam domain/function: PF00730 HhH-GPD [H]

EC number: =3.2.2.21 [H]

Molecular weight: Translated: 22892; Mature: 22760

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPVLPASLPLTDHAAALAWLARDPALADVLARTPPLPVLTPTPHPFGTLVRSVVGQQLS
CCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
TQAAASIAARLEDALGGVEPEALLRTPPDKLRALGLSWAKVRTVRALADAALSGQVDFAH
HHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHH
LSSLPDAAVIDALTPLPGIGRWTVEMFLMFGLARPDVFSFGDLVLRQGLSRLYPHVAPGS
HHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
AQAAVVAAWSPYRTLAARVLWAERRTDKERGASDPL
CCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
PPVLPASLPLTDHAAALAWLARDPALADVLARTPPLPVLTPTPHPFGTLVRSVVGQQLS
CCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
TQAAASIAARLEDALGGVEPEALLRTPPDKLRALGLSWAKVRTVRALADAALSGQVDFAH
HHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHH
LSSLPDAAVIDALTPLPGIGRWTVEMFLMFGLARPDVFSFGDLVLRQGLSRLYPHVAPGS
HHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
AQAAVVAAWSPYRTLAARVLWAERRTDKERGASDPL
CCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]