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The map label for this gene is rbcR [H]

Identifier: 94972178

GI number: 94972178

Start: 316490

End: 317368

Strand: Direct

Name: rbcR [H]

Synonym: Dgeo_2711

Alternate gene names: 94972178

Gene position: 316490-317368 (Clockwise)

Preceding gene: 94972184

Following gene: 94972174

Centisome position: 55.13

GC content: 71.67

Gene sequence:

>879_bases
ATGCGCGTCAATCCGGAGTACCTCCTCACCTTCAGCACGGTGGCGGAGGTAGGCTCAGTCAGCAAGGCGGCCGAACACCT
CCACCTCAGCCAACCGGCGGTGAGCGGGCAACTGCGGGCGCTCACCGAGCTGATCGGCGAACCGCTCTACACCCGCCATG
CCCGCGGCATCACCCTGACGGAGGCAGGCCTGGAGCTCCTGCCGCACGCGCAGGCCCTCGCTCGGACGATGCGGCAGGTG
GGCGAACTCGCGCACGTCAAGCGGCACCGGGTCAAGTCTCACGTGCGGCTCGGCGTGTCCTGGACCCTCTCTCCCCGCGC
CGTCACACTGGCCAACCACTTTCGGGAAGGGCACCCCAGCCTGGGCATCCACGCGGCCCACACGCCGGAGCTGATCGCCC
GCGTCGCCCGCGGGGAGCTGGACGCGGCTCTCACGGTGGACGCCAGCCAGGGCCTGCCCGACGGCCTGGAAGCTCGGCGC
TTTGCGAGCGAGGACCTGCGCCTCATCACCCCGGCGGGACATCCGCTCGCGGGTGAAGGCTACGTCGCCCCCCGGCTGCT
CGCGGGCGAGACCCTGCTGCTGCCCATGCCGGAATCCAGCGTGCGGCGGCGGGCAGCGCGGCTGCTCGAACACGCGGGCG
TCACGCCCGAACGGCCCCTCGAACTCAGCAGTTTTCTCGCGGTCAAAGAGGCCCTGGTGCGCGGCGTCGGCGTGGCCATC
TTGCCGCGCAGCCTGGTGGCCGCCGAAGTGGACTGCGGCCTCCTCGCCAGCGTGGGCCTGGAGACCGTAGAGGTGACTCT
GGGCTACCACGCCATCAGCGCGCCGCTGCCGCTGCTGCCGGGGGCCGTGCGAACGGTGCTCGACCGCCTGACCCGATAG

Upstream 100 bases:

>100_bases
CCAGTGTTCGCTCCTCCTAGAGCAAAAGCAAATAGTCTGTTCCTATCCCTAGTATTGGCTGGGACGATATCTGTACAAAG
CTGTCTGATACAGTGCCACC

Downstream 100 bases:

>100_bases
GAGCACGCGCTCAGGGTGAGGCGAGCAGCCCGGAGACCATGCCCAGGCAGCAGCGGCCCTGCGGATTGTTGACCTCGCAG
CCGCAGCGCCCGGCCCGGAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MRVNPEYLLTFSTVAEVGSVSKAAEHLHLSQPAVSGQLRALTELIGEPLYTRHARGITLTEAGLELLPHAQALARTMRQV
GELAHVKRHRVKSHVRLGVSWTLSPRAVTLANHFREGHPSLGIHAAHTPELIARVARGELDAALTVDASQGLPDGLEARR
FASEDLRLITPAGHPLAGEGYVAPRLLAGETLLLPMPESSVRRRAARLLEHAGVTPERPLELSSFLAVKEALVRGVGVAI
LPRSLVAAEVDCGLLASVGLETVEVTLGYHAISAPLPLLPGAVRTVLDRLTR

Sequences:

>Translated_292_residues
MRVNPEYLLTFSTVAEVGSVSKAAEHLHLSQPAVSGQLRALTELIGEPLYTRHARGITLTEAGLELLPHAQALARTMRQV
GELAHVKRHRVKSHVRLGVSWTLSPRAVTLANHFREGHPSLGIHAAHTPELIARVARGELDAALTVDASQGLPDGLEARR
FASEDLRLITPAGHPLAGEGYVAPRLLAGETLLLPMPESSVRRRAARLLEHAGVTPERPLELSSFLAVKEALVRGVGVAI
LPRSLVAAEVDCGLLASVGLETVEVTLGYHAISAPLPLLPGAVRTVLDRLTR
>Mature_292_residues
MRVNPEYLLTFSTVAEVGSVSKAAEHLHLSQPAVSGQLRALTELIGEPLYTRHARGITLTEAGLELLPHAQALARTMRQV
GELAHVKRHRVKSHVRLGVSWTLSPRAVTLANHFREGHPSLGIHAAHTPELIARVARGELDAALTVDASQGLPDGLEARR
FASEDLRLITPAGHPLAGEGYVAPRLLAGETLLLPMPESSVRRRAARLLEHAGVTPERPLELSSFLAVKEALVRGVGVAI
LPRSLVAAEVDCGLLASVGLETVEVTLGYHAISAPLPLLPGAVRTVLDRLTR

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=248, Percent_Identity=32.6612903225806, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI87082132, Length=284, Percent_Identity=25.7042253521127, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1788297, Length=255, Percent_Identity=29.0196078431373, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1787601, Length=256, Percent_Identity=23.4375, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790399, Length=242, Percent_Identity=27.2727272727273, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87081904, Length=198, Percent_Identity=29.7979797979798, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786713, Length=283, Percent_Identity=26.5017667844523, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787879, Length=258, Percent_Identity=27.5193798449612, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI48994962, Length=187, Percent_Identity=30.4812834224599, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789506, Length=247, Percent_Identity=23.8866396761134, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1790262, Length=260, Percent_Identity=26.5384615384615, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31268; Mature: 31268

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVNPEYLLTFSTVAEVGSVSKAAEHLHLSQPAVSGQLRALTELIGEPLYTRHARGITLT
CCCCHHHEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHCCCCCEEH
EAGLELLPHAQALARTMRQVGELAHVKRHRVKSHVRLGVSWTLSPRAVTLANHFREGHPS
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECEEEECCCCCHHHHHHHHCCCCC
LGIHAAHTPELIARVARGELDAALTVDASQGLPDGLEARRFASEDLRLITPAGHPLAGEG
CCEECCCCHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCC
YVAPRLLAGETLLLPMPESSVRRRAARLLEHAGVTPERPLELSSFLAVKEALVRGVGVAI
CCCCCEECCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHH
LPRSLVAAEVDCGLLASVGLETVEVTLGYHAISAPLPLLPGAVRTVLDRLTR
HHHHHHHHHCCCHHHHHCCCEEEEEEECHHHHCCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MRVNPEYLLTFSTVAEVGSVSKAAEHLHLSQPAVSGQLRALTELIGEPLYTRHARGITLT
CCCCHHHEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHCCCCCEEH
EAGLELLPHAQALARTMRQVGELAHVKRHRVKSHVRLGVSWTLSPRAVTLANHFREGHPS
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECEEEECCCCCHHHHHHHHCCCCC
LGIHAAHTPELIARVARGELDAALTVDASQGLPDGLEARRFASEDLRLITPAGHPLAGEG
CCEECCCCHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCC
YVAPRLLAGETLLLPMPESSVRRRAARLLEHAGVTPERPLELSSFLAVKEALVRGVGVAI
CCCCCEECCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHH
LPRSLVAAEVDCGLLASVGLETVEVTLGYHAISAPLPLLPGAVRTVLDRLTR
HHHHHHHHHCCCHHHHHCCCEEEEEEECHHHHCCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]