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The map label for this gene is xylA [H]

Identifier: 94972159

GI number: 94972159

Start: 336928

End: 338139

Strand: Direct

Name: xylA [H]

Synonym: Dgeo_2692

Alternate gene names: 94972159

Gene position: 336928-338139 (Clockwise)

Preceding gene: 94972160

Following gene: 94972158

Centisome position: 58.69

GC content: 63.12

Gene sequence:

>1212_bases
ATGCCTGATTACACCCCCACGCCGGCTGACAAATTCACCTTCGGCCTCTGGACGGTCGGCCAAACCGGGCGCGACCCCTT
CGGTGAGGCGACCCGTCCGGGCTTCTCCGCCCCGTACATCGTCCAGAAGCTCGCCGAACTCGGCGCGTACGGCGTCAACC
TGCATGACAACGATCTGGTCCCAATCGATGCCACCCCGCAACAACGGGACCGCATCGTGGCCGAGTTCAAGCAAGCGCTG
TCCGATCATGGCCTCGTCGTACCAATGGCAACCACCAATCTGTTCACCGACCCTGTCTTCAAAGACGGCGCCTTCACCTC
CGCCGACGCGCGGGTGCGGGCCTACGCCCTGCAAAAGACGATGCAGAGCATGGACCTTGGCCACGAACTGGGGGCGCAGA
CCTACGTCTTCTGGGGCGGGCGCGAGGGCACCGAGGTGGATGCCAGCAGCAAACTGCTCGATGCGCTCGCCTGGTTCCGC
GACAGCCTCAACTTCCTCGCGGAGTACAGCCAGAGTCAGGGGTACGGCTACCGCTTCGCACTGGAACCTAAACCCAACGA
GCCTCGAGGCGACATCTTCTTTCCTACGGCAGGCTCCATGCTGGGCTTTATCGCCACCCTCGATCAACCGGACCTTTTCG
GAGTGAACCCCGAGTTCGCGCACGACACGATGGCGGGATTGAACTTCACCCACGCCGTCGCACAGGTGATTGACGCCGGG
AAGCTGTTCCACATCGACCTGAATGACCAGAAGATGGGCCGCTTCGACCAGGATCTGCGCTTTGGGGCGGAGAACCTCAA
GACTGCCTTCTTCCTGGTCAAGCTGCTGGAGGACAGCGGCTACGACGGTCCGCGCCACTTCGACGCCCACGCCCTGCGCA
CTGAGGACGAAGAAGGGGTATGGGCGTTTGCCCGTGGGTGTATGCGGACCTACCTGATCCTGAAGGAGAAAGCGCAGCAA
TTTGACGAGGACCCGGAGATTCAGGCGGCCCTCGCAGCATATCGCGTGGACGACGAGGAACTCTCGCGCCTCACCGCGAA
GTTCAGCCCGGAGAACGCCAAGGCACTCAAGGCGCGGACCTTCGACCGGGAGTTGTTGGGCCGACGTGGGCCAGGTCTCG
AGCAGCTCGACCAGCTCACGGTGGAGCTGCTGCTGGGGCTGCGCGGCCACACGTCCACGACGACTCATCCAGAGATCGAG
GTCACGAGGTGA

Upstream 100 bases:

>100_bases
GCAGCCGCACACTGCTTAAACCTCCGGTCATATCGGGTTCGCCGTCCTCCCCATGAGGATCTTCAACCGCCCATCTCTCC
GCTTGATGAAAGGAAGAACC

Downstream 100 bases:

>100_bases
CCCCAAGGCCCGTCACCCTGGGCCTAGACCTGGGCACAAGTGGCGTGAAGGTCGTGGCCCTCGACGCGCAGGGCCAAACA
ATCGCTGAGGTGCAGCGGAG

Product: xylose isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 402

Protein sequence:

>403_residues
MPDYTPTPADKFTFGLWTVGQTGRDPFGEATRPGFSAPYIVQKLAELGAYGVNLHDNDLVPIDATPQQRDRIVAEFKQAL
SDHGLVVPMATTNLFTDPVFKDGAFTSADARVRAYALQKTMQSMDLGHELGAQTYVFWGGREGTEVDASSKLLDALAWFR
DSLNFLAEYSQSQGYGYRFALEPKPNEPRGDIFFPTAGSMLGFIATLDQPDLFGVNPEFAHDTMAGLNFTHAVAQVIDAG
KLFHIDLNDQKMGRFDQDLRFGAENLKTAFFLVKLLEDSGYDGPRHFDAHALRTEDEEGVWAFARGCMRTYLILKEKAQQ
FDEDPEIQAALAAYRVDDEELSRLTAKFSPENAKALKARTFDRELLGRRGPGLEQLDQLTVELLLGLRGHTSTTTHPEIE
VTR

Sequences:

>Translated_403_residues
MPDYTPTPADKFTFGLWTVGQTGRDPFGEATRPGFSAPYIVQKLAELGAYGVNLHDNDLVPIDATPQQRDRIVAEFKQAL
SDHGLVVPMATTNLFTDPVFKDGAFTSADARVRAYALQKTMQSMDLGHELGAQTYVFWGGREGTEVDASSKLLDALAWFR
DSLNFLAEYSQSQGYGYRFALEPKPNEPRGDIFFPTAGSMLGFIATLDQPDLFGVNPEFAHDTMAGLNFTHAVAQVIDAG
KLFHIDLNDQKMGRFDQDLRFGAENLKTAFFLVKLLEDSGYDGPRHFDAHALRTEDEEGVWAFARGCMRTYLILKEKAQQ
FDEDPEIQAALAAYRVDDEELSRLTAKFSPENAKALKARTFDRELLGRRGPGLEQLDQLTVELLLGLRGHTSTTTHPEIE
VTR
>Mature_402_residues
PDYTPTPADKFTFGLWTVGQTGRDPFGEATRPGFSAPYIVQKLAELGAYGVNLHDNDLVPIDATPQQRDRIVAEFKQALS
DHGLVVPMATTNLFTDPVFKDGAFTSADARVRAYALQKTMQSMDLGHELGAQTYVFWGGREGTEVDASSKLLDALAWFRD
SLNFLAEYSQSQGYGYRFALEPKPNEPRGDIFFPTAGSMLGFIATLDQPDLFGVNPEFAHDTMAGLNFTHAVAQVIDAGK
LFHIDLNDQKMGRFDQDLRFGAENLKTAFFLVKLLEDSGYDGPRHFDAHALRTEDEEGVWAFARGCMRTYLILKEKAQQF
DEDPEIQAALAAYRVDDEELSRLTAKFSPENAKALKARTFDRELLGRRGPGLEQLDQLTVELLLGLRGHTSTTTHPEIEV
TR

Specific function: Unknown

COG id: COG2115

COG function: function code G; Xylose isomerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xylose isomerase family [H]

Homologues:

Organism=Escherichia coli, GI1789988, Length=287, Percent_Identity=27.5261324041812, Blast_Score=101, Evalue=9e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013022
- InterPro:   IPR012307
- InterPro:   IPR013453
- InterPro:   IPR001998 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: =5.3.1.5 [H]

Molecular weight: Translated: 44901; Mature: 44770

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: PS00172 XYLOSE_ISOMERASE_1 ; PS00173 XYLOSE_ISOMERASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDYTPTPADKFTFGLWTVGQTGRDPFGEATRPGFSAPYIVQKLAELGAYGVNLHDNDLV
CCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEE
PIDATPQQRDRIVAEFKQALSDHGLVVPMATTNLFTDPVFKDGAFTSADARVRAYALQKT
ECCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCHHCCCCCCCCCCCCCCHHHHHHHHHHH
MQSMDLGHELGAQTYVFWGGREGTEVDASSKLLDALAWFRDSLNFLAEYSQSQGYGYRFA
HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
LEPKPNEPRGDIFFPTAGSMLGFIATLDQPDLFGVNPEFAHDTMAGLNFTHAVAQVIDAG
ECCCCCCCCCCEECCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCC
KLFHIDLNDQKMGRFDQDLRFGAENLKTAFFLVKLLEDSGYDGPRHFDAHALRTEDEEGV
CEEEEECCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCH
WAFARGCMRTYLILKEKAQQFDEDPEIQAALAAYRVDDEELSRLTAKFSPENAKALKART
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHH
FDRELLGRRGPGLEQLDQLTVELLLGLRGHTSTTTHPEIEVTR
HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEECC
>Mature Secondary Structure 
PDYTPTPADKFTFGLWTVGQTGRDPFGEATRPGFSAPYIVQKLAELGAYGVNLHDNDLV
CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEE
PIDATPQQRDRIVAEFKQALSDHGLVVPMATTNLFTDPVFKDGAFTSADARVRAYALQKT
ECCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCHHCCCCCCCCCCCCCCHHHHHHHHHHH
MQSMDLGHELGAQTYVFWGGREGTEVDASSKLLDALAWFRDSLNFLAEYSQSQGYGYRFA
HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
LEPKPNEPRGDIFFPTAGSMLGFIATLDQPDLFGVNPEFAHDTMAGLNFTHAVAQVIDAG
ECCCCCCCCCCEECCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCC
KLFHIDLNDQKMGRFDQDLRFGAENLKTAFFLVKLLEDSGYDGPRHFDAHALRTEDEEGV
CEEEEECCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCH
WAFARGCMRTYLILKEKAQQFDEDPEIQAALAAYRVDDEELSRLTAKFSPENAKALKART
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHH
FDRELLGRRGPGLEQLDQLTVELLLGLRGHTSTTTHPEIEVTR
HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10089429; 10329168 [H]