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The map label for this gene is pecS [H]

Identifier: 94971999

GI number: 94971999

Start: 514526

End: 515047

Strand: Direct

Name: pecS [H]

Synonym: Dgeo_2531

Alternate gene names: 94971999

Gene position: 514526-515047 (Clockwise)

Preceding gene: 94972000

Following gene: 94971996

Centisome position: 89.62

GC content: 67.24

Gene sequence:

>522_bases
ATGGCGCCCCCGCAGACTTCAGACCTTCTCGAACGCATCCGCCGGGACTGGGCACAGGTTCAGCCGGATCTTGACCCCAG
CCCTATGCTGCCGCTGCTGCTGCTGGCCAGGTTGCAAAGCGCGCTGCTTCGACAGATCGAAACCACCTATCGGGTCGCCG
GAATCAATCCGGCTGGGTGGGATCTGCTGCTGACGCTGTACCGTTCGGCGCCACCCGAGGGGTTGACCCCCACGCAGCTC
ACTGACCTCACCGCCATCAGCGGCCCCTCCATCACCAACCGAGTGGACCGGCTGGTCCAGAAGGGCCTGGCCGAACGGCA
AGCGAGCGCGTCCGACCGCCGCTCGGTCCGGGTGCGGCTGACTCCGGCGGGCCGCGCCCTGGTCGAAGAGCTGCTGCCAC
GCCACATCGAAAACGAGGCCCGCATTCTGGCCGCACTCACCCCCACCGAGACGCAGCAGCTCGAACACCTCGCCCTCAAA
CTGCTTGCGGGGCTAGAAGCAACCGCAGAGCGGCAGGGCTGA

Upstream 100 bases:

>100_bases
TGCTGCGTTCAGGCGGCTTCCCGGCCTGTGGGATCGGCGGCACGTCCACGCGTCGCAGCGGTGTGCGTGCTAGGCTCAAC
CGCACCCAAAGGCATACATC

Downstream 100 bases:

>100_bases
TTCGGGATGGGGCCTGGCTTCGGGATGGTGTGGATTCCAACCGCTGTTAGGAAAAACGCCGACAGCGGTCCCTCGTTCGG
TCTCCAGTGGCGCAATTCCG

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 172

Protein sequence:

>173_residues
MAPPQTSDLLERIRRDWAQVQPDLDPSPMLPLLLLARLQSALLRQIETTYRVAGINPAGWDLLLTLYRSAPPEGLTPTQL
TDLTAISGPSITNRVDRLVQKGLAERQASASDRRSVRVRLTPAGRALVEELLPRHIENEARILAALTPTETQQLEHLALK
LLAGLEATAERQG

Sequences:

>Translated_173_residues
MAPPQTSDLLERIRRDWAQVQPDLDPSPMLPLLLLARLQSALLRQIETTYRVAGINPAGWDLLLTLYRSAPPEGLTPTQL
TDLTAISGPSITNRVDRLVQKGLAERQASASDRRSVRVRLTPAGRALVEELLPRHIENEARILAALTPTETQQLEHLALK
LLAGLEATAERQG
>Mature_172_residues
APPQTSDLLERIRRDWAQVQPDLDPSPMLPLLLLARLQSALLRQIETTYRVAGINPAGWDLLLTLYRSAPPEGLTPTQLT
DLTAISGPSITNRVDRLVQKGLAERQASASDRRSVRVRLTPAGRALVEELLPRHIENEARILAALTPTETQQLEHLALKL
LAGLEATAERQG

Specific function: Negative regulator of pectinase, cellulase, blue pigment production and virulence genes. Also binds to promoter sites in the pecS-pecM intergenic region and negatively autoregulate its expression as well as that of pecM [H]

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789040, Length=157, Percent_Identity=29.2993630573248, Blast_Score=61, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 19087; Mature: 18956

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPPQTSDLLERIRRDWAQVQPDLDPSPMLPLLLLARLQSALLRQIETTYRVAGINPAGW
CCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
DLLLTLYRSAPPEGLTPTQLTDLTAISGPSITNRVDRLVQKGLAERQASASDRRSVRVRL
HHHHHHHHCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
TPAGRALVEELLPRHIENEARILAALTPTETQQLEHLALKLLAGLEATAERQG
CCCHHHHHHHHHHHHHCCHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
APPQTSDLLERIRRDWAQVQPDLDPSPMLPLLLLARLQSALLRQIETTYRVAGINPAGW
CCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
DLLLTLYRSAPPEGLTPTQLTDLTAISGPSITNRVDRLVQKGLAERQASASDRRSVRVRL
HHHHHHHHCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
TPAGRALVEELLPRHIENEARILAALTPTETQQLEHLALKLLAGLEATAERQG
CCCHHHHHHHHHHHHHCCHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8022282; 9194707 [H]