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The map label for this gene is yvoA [H]

Identifier: 94971977

GI number: 94971977

Start: 541428

End: 542201

Strand: Direct

Name: yvoA [H]

Synonym: Dgeo_2509

Alternate gene names: 94971977

Gene position: 541428-542201 (Clockwise)

Preceding gene: 94971987

Following gene: 94971976

Centisome position: 94.3

GC content: 71.32

Gene sequence:

>774_bases
ATGTCTGTCTCCTCACCACCCTGGGTGGTTCCGCTGGATCCCGCGAGCGCTACGCCCGTCTACGTGCAGGTGGCGCACGG
TCTTGCTGCCCGGATCGAGAACGGCACGCTGAAAGGCGGTATGGCTCTGCCCGCCGAACGGGATCTGGCTGAGGCGCTGG
GCGTATCGCGCGTCACCGTGCGGCAGGCCCTGGCCCTGCTTGCCCAGCAGGGGCTGCTCACGCGGCGGCATGGGAGCGGC
ACCTTCGTGAACCGGCCCGCCCCTTCGCTGGCCTCCCGGCCCCTCGGCCTGCTGACTGGCTTTTCGGAGGACGTGCGTTC
ACGCGGGCAGACGCCTGGGGCGCGGGTTCTCTCTTTCGAACGTGGCCGCCCCACTCCACAGGAGGCCATGACGCTGGCCC
TCTCGCCCCGCGACGGCGTGTACCGCCTGCGCCGCCTGCGCACGGCGGACGGCGAACCGCTGGCCGTGGAGGAAAGCACC
CTGCCCGCCGCCCTGATTGGGCCGCTTGGCGCGGCCGACGTGACTGACGCGAGCCTGTACGCGCTGCTCGCCGCGCGGGG
CCTGAGTCCGGTGCGAGCGGTGCGCCACTTGCGAGCCGTCAACGCCGACGGGCAGCTGGTGGGGTGGCTCGGTGTTCCCC
CCGGTGCAGCGCTGCTCGCCACTGAGCGCGTGTCGTGGACGGCGACCGGGAAACCCGTGGAACACGCCCGGGCGTACTAC
CGGGGTGACCGCTACGACTTCGTGATGGAACTGCACGGCGAGGAACAGTCGTGA

Upstream 100 bases:

>100_bases
GGGGGCGAATTGTGATCAAGATACCGCCCTAGCATAGAACCACTTTGAGTCCACTTCAAGCTCTCTCGCTTACTGGTTTC
AAAGTGGTAAGGTGAAAGGG

Downstream 100 bases:

>100_bases
CCCCCCGCGTCCTGGGCCTCATGAGCGGCACGAGCGCCGACGGCATCGACGCCGCGCTGCTGGAGCTGCCCGGTTGGCCA
CCGACGGGGTCAGGAGGGAT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MSVSSPPWVVPLDPASATPVYVQVAHGLAARIENGTLKGGMALPAERDLAEALGVSRVTVRQALALLAQQGLLTRRHGSG
TFVNRPAPSLASRPLGLLTGFSEDVRSRGQTPGARVLSFERGRPTPQEAMTLALSPRDGVYRLRRLRTADGEPLAVEEST
LPAALIGPLGAADVTDASLYALLAARGLSPVRAVRHLRAVNADGQLVGWLGVPPGAALLATERVSWTATGKPVEHARAYY
RGDRYDFVMELHGEEQS

Sequences:

>Translated_257_residues
MSVSSPPWVVPLDPASATPVYVQVAHGLAARIENGTLKGGMALPAERDLAEALGVSRVTVRQALALLAQQGLLTRRHGSG
TFVNRPAPSLASRPLGLLTGFSEDVRSRGQTPGARVLSFERGRPTPQEAMTLALSPRDGVYRLRRLRTADGEPLAVEEST
LPAALIGPLGAADVTDASLYALLAARGLSPVRAVRHLRAVNADGQLVGWLGVPPGAALLATERVSWTATGKPVEHARAYY
RGDRYDFVMELHGEEQS
>Mature_256_residues
SVSSPPWVVPLDPASATPVYVQVAHGLAARIENGTLKGGMALPAERDLAEALGVSRVTVRQALALLAQQGLLTRRHGSGT
FVNRPAPSLASRPLGLLTGFSEDVRSRGQTPGARVLSFERGRPTPQEAMTLALSPRDGVYRLRRLRTADGEPLAVEESTL
PAALIGPLGAADVTDASLYALLAARGLSPVRAVRHLRAVNADGQLVGWLGVPPGAALLATERVSWTATGKPVEHARAYYR
GDRYDFVMELHGEEQS

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788418, Length=237, Percent_Identity=31.6455696202532, Blast_Score=120, Evalue=9e-29,
Organism=Escherichia coli, GI1786950, Length=233, Percent_Identity=29.1845493562232, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1790118, Length=233, Percent_Identity=28.755364806867, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI87082252, Length=235, Percent_Identity=26.3829787234043, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27276; Mature: 27145

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVSSPPWVVPLDPASATPVYVQVAHGLAARIENGTLKGGMALPAERDLAEALGVSRVTV
CCCCCCCEEEECCCCCCCCEEEEEHHHHHHHHCCCCCCCCEECCCHHHHHHHHCCHHHHH
RQALALLAQQGLLTRRHGSGTFVNRPAPSLASRPLGLLTGFSEDVRSRGQTPGARVLSFE
HHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHCCHHHHHCCCHHHHHCCCCCCCEEEEEC
RGRPTPQEAMTLALSPRDGVYRLRRLRTADGEPLAVEESTLPAALIGPLGAADVTDASLY
CCCCCHHHHEEEEECCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHCCCCCCCCCHHHHH
ALLAARGLSPVRAVRHLRAVNADGQLVGWLGVPPGAALLATERVSWTATGKPVEHARAYY
HHHHHCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEECCEEEEECCCCHHHHHHHH
RGDRYDFVMELHGEEQS
CCCCEEEEEEECCCCCC
>Mature Secondary Structure 
SVSSPPWVVPLDPASATPVYVQVAHGLAARIENGTLKGGMALPAERDLAEALGVSRVTV
CCCCCCEEEECCCCCCCCEEEEEHHHHHHHHCCCCCCCCEECCCHHHHHHHHCCHHHHH
RQALALLAQQGLLTRRHGSGTFVNRPAPSLASRPLGLLTGFSEDVRSRGQTPGARVLSFE
HHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHCCHHHHHCCCHHHHHCCCCCCCEEEEEC
RGRPTPQEAMTLALSPRDGVYRLRRLRTADGEPLAVEESTLPAALIGPLGAADVTDASLY
CCCCCHHHHEEEEECCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHCCCCCCCCCHHHHH
ALLAARGLSPVRAVRHLRAVNADGQLVGWLGVPPGAALLATERVSWTATGKPVEHARAYY
HHHHHCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEECCEEEEECCCCHHHHHHHH
RGDRYDFVMELHGEEQS
CCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]