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The map label for this gene is yulB [H]

Identifier: 94971924

GI number: 94971924

Start: 27981

End: 28769

Strand: Direct

Name: yulB [H]

Synonym: Dgeo_2456

Alternate gene names: 94971924

Gene position: 27981-28769 (Clockwise)

Preceding gene: 94971935

Following gene: 94971923

Centisome position: 4.87

GC content: 63.62

Gene sequence:

>789_bases
ATGGTCACCGATACCCTCAAGGTGGGCAGCGAACGCCAGCACCTGATTCTGCGTCGTGCTCTGGCCGAGCGCGTGGTCAA
GATCAAGGACCTGGCCGCGGAGCTTGGCGTCCACGAGATGACTGTTCGGCGCGACCTTGACCAGCTTGCAGAACAGGGTC
TTTTGGAACGGGTGCATGGGGGCGCACGGCTGCTGGAAAAGACCAGCGAGGAAATCGCCCACCAGCTCCGCGTGACCACC
AATACCGAGGCCAAGGCCCAACTGGCCCGCGCTGCTCTTGCGTTGATCGAGGATGGCGATGTGGTCGCGCTGGACGCCAG
CACCACAGCTCTTGCGCTGGCCCGCATCCTGCACGCCCGGCAGGTGACGGCCATCCTCACGGGTCTGGACGCGGCCAATG
TCGCCGCTCAAAACGGCGTGCCGTTTCTGATGGTCGGTGGCAACTTCCACGCGCCCGCTCGTTCCTTTGTGGGGGCCTTT
TTTATGGCCACGATGGCCAAGCTGCATCCCGATAAGGTGTTCTTTTCCGCCAAGGCGTTTTCGCCGGGCACCGGCTTTAC
AGACGCGCATCTGCCCGAGGTGGGGGCCAAGCAGGCGCTGATCGCTTCGGGAGGCACGCGGATCGCGCTGCTCGATGCTT
CCAAGTTTGGGGGCCGCGCCCTGGCCACCATCGCCACGCTCGATCAGGTGGATGTCCTGATCACCAACCGCCCGCCATCG
GCAGAAACGCGCGCTGCGCTGGATGCTGCTGATATCAGACTCATCGTAACCGCACAGGAGGAGACATGA

Upstream 100 bases:

>100_bases
CCAGTCAGCAGGTTGTGATTTTTGTTCCTGCATCTAACACCACCGCTCAAAAAAATGCAAGCTCTTGTCAAATCCTGTTT
GTTTGGTGTTAGATTCGGCT

Downstream 100 bases:

>100_bases
ATCCAGACACCCTGTTCCAGGCCCTCGACCGGCAGCGCATTGAGACGCCCTCGTGGGGCTACGGTAACTCGGGGACCCGC
TTCAAGACGTTTGCCGCGCC

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MVTDTLKVGSERQHLILRRALAERVVKIKDLAAELGVHEMTVRRDLDQLAEQGLLERVHGGARLLEKTSEEIAHQLRVTT
NTEAKAQLARAALALIEDGDVVALDASTTALALARILHARQVTAILTGLDAANVAAQNGVPFLMVGGNFHAPARSFVGAF
FMATMAKLHPDKVFFSAKAFSPGTGFTDAHLPEVGAKQALIASGGTRIALLDASKFGGRALATIATLDQVDVLITNRPPS
AETRAALDAADIRLIVTAQEET

Sequences:

>Translated_262_residues
MVTDTLKVGSERQHLILRRALAERVVKIKDLAAELGVHEMTVRRDLDQLAEQGLLERVHGGARLLEKTSEEIAHQLRVTT
NTEAKAQLARAALALIEDGDVVALDASTTALALARILHARQVTAILTGLDAANVAAQNGVPFLMVGGNFHAPARSFVGAF
FMATMAKLHPDKVFFSAKAFSPGTGFTDAHLPEVGAKQALIASGGTRIALLDASKFGGRALATIATLDQVDVLITNRPPS
AETRAALDAADIRLIVTAQEET
>Mature_262_residues
MVTDTLKVGSERQHLILRRALAERVVKIKDLAAELGVHEMTVRRDLDQLAEQGLLERVHGGARLLEKTSEEIAHQLRVTT
NTEAKAQLARAALALIEDGDVVALDASTTALALARILHARQVTAILTGLDAANVAAQNGVPFLMVGGNFHAPARSFVGAF
FMATMAKLHPDKVFFSAKAFSPGTGFTDAHLPEVGAKQALIASGGTRIALLDASKFGGRALATIATLDQVDVLITNRPPS
AETRAALDAADIRLIVTAQEET

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788069, Length=236, Percent_Identity=30.0847457627119, Blast_Score=103, Evalue=8e-24,
Organism=Escherichia coli, GI1789519, Length=254, Percent_Identity=29.1338582677165, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI226510968, Length=253, Percent_Identity=29.2490118577075, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1787540, Length=229, Percent_Identity=27.5109170305677, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1789170, Length=228, Percent_Identity=27.1929824561404, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1789059, Length=254, Percent_Identity=28.3464566929134, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1789829, Length=247, Percent_Identity=25.5060728744939, Blast_Score=84, Evalue=6e-18,
Organism=Escherichia coli, GI1790635, Length=253, Percent_Identity=26.0869565217391, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1790753, Length=206, Percent_Identity=29.126213592233, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI87082344, Length=243, Percent_Identity=27.1604938271605, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787063, Length=234, Percent_Identity=27.7777777777778, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 27809; Mature: 27809

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTDTLKVGSERQHLILRRALAERVVKIKDLAAELGVHEMTVRRDLDQLAEQGLLERVHG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
GARLLEKTSEEIAHQLRVTTNTEAKAQLARAALALIEDGDVVALDASTTALALARILHAR
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHH
QVTAILTGLDAANVAAQNGVPFLMVGGNFHAPARSFVGAFFMATMAKLHPDKVFFSAKAF
HHHHHHHCCCHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECC
SPGTGFTDAHLPEVGAKQALIASGGTRIALLDASKFGGRALATIATLDQVDVLITNRPPS
CCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCHHHHHHHHHHHEEEEEECCCCC
AETRAALDAADIRLIVTAQEET
HHHHHHHCCCCEEEEEEECCCC
>Mature Secondary Structure
MVTDTLKVGSERQHLILRRALAERVVKIKDLAAELGVHEMTVRRDLDQLAEQGLLERVHG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
GARLLEKTSEEIAHQLRVTTNTEAKAQLARAALALIEDGDVVALDASTTALALARILHAR
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHH
QVTAILTGLDAANVAAQNGVPFLMVGGNFHAPARSFVGAFFMATMAKLHPDKVFFSAKAF
HHHHHHHCCCHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECC
SPGTGFTDAHLPEVGAKQALIASGGTRIALLDASKFGGRALATIATLDQVDVLITNRPPS
CCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCHHHHHHHHHHHEEEEEECCCCC
AETRAALDAADIRLIVTAQEET
HHHHHHHCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377 [H]