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The map label for this gene is yvrC [H]

Identifier: 94971832

GI number: 94971832

Start: 126435

End: 127304

Strand: Direct

Name: yvrC [H]

Synonym: Dgeo_2363

Alternate gene names: 94971832

Gene position: 126435-127304 (Clockwise)

Preceding gene: 94971835

Following gene: 94971831

Centisome position: 22.02

GC content: 64.71

Gene sequence:

>870_bases
ATGCGCCGTGTTCTTGTCTTGGCTATCTTGGCGCTGCCGGCCAGCGCCGCCGCTACGACCTATCCCCTCACTGTTACCGA
TGACCTGGGCCGCACCGTCACCTTGAACCGTGAGCCGAAGCGCATCATCGCCATGCTGCCCTCGCACACCGAGACCCTGA
TCGCCATCGGTGCCGGGGACAAGTTGGTGGCGGTGGACCGCTTCAGCAACTTTCCCAAGAACGTCACGGACAAGCTCCCC
AAGGTGGGCAGTGCCTACCAGCCCAACCTGGAAGCGATCCTGGCCCTGAAGCCTGACCTGGTGCTTGCCGACGAGTCGGC
GGGGTCGCGCCTCACCGAAAAGCTCGCAGCGGCGGGCTTGACGGTGTATGGCGGCACCGCGCAGACCTACAACGAGGTGT
TCCAGAAGATCAGTGTCCTGGGAAAACTCACCAACCACGAGGCGGGGGCGCTGCGGCTGATCACCAGCATGCGCGCGGAG
TTGAACGCGCTGCAAAAAAGTGTTGTGGGCCTCCCCAAGGTGAGCACCTATTACGAGGTGGATCCCAGCCCCTATTCGGT
GGGCCCCAATTCCTTTATCGGTACCCTGATCGCGAAGGCGGGTGGCCAAACCATCGTGCCCGCGCGGCTGGGGGACTTTC
CCAAGCTGGATCCCGAGCTGATTGTGAAAGCCAACCCGCAGGTGATGGTGGGCCTGACCCTGGAAGACGCCCGCAAGCGC
CCAGGTTGGCAAAACCTCCAGGCGGTGCGGGCTGGGCGGGTGTTCCAGCCCACGCCGGAGGAGCGCGACGCCCTCTCGCG
CCCTGGCCCGCGGTTGCCGGACGCGCTGCGGACCCTGATTCGCTTCCTGCATCCGGAGGCGCTGAAATGA

Upstream 100 bases:

>100_bases
TTTGAGGTGGCTGACTGTGGTCTGCCCCGCTCTGGCCCGCGGCTGGAGCGGGGTTTTCGTGCGCCCGCTTCCGCTGTCCT
TCCTGCACGCCGGAGTTTGC

Downstream 100 bases:

>100_bases
CCGACGACGTGACGCGGGCACGCCGCGAGGCCGCCATGCGCGAGCTGGAAGAGGCGCGTGCGCAGCACCACAAGCGCGAG
GACCTCACCCGAGGTCGCCG

Product: periplasmic binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MRRVLVLAILALPASAAATTYPLTVTDDLGRTVTLNREPKRIIAMLPSHTETLIAIGAGDKLVAVDRFSNFPKNVTDKLP
KVGSAYQPNLEAILALKPDLVLADESAGSRLTEKLAAAGLTVYGGTAQTYNEVFQKISVLGKLTNHEAGALRLITSMRAE
LNALQKSVVGLPKVSTYYEVDPSPYSVGPNSFIGTLIAKAGGQTIVPARLGDFPKLDPELIVKANPQVMVGLTLEDARKR
PGWQNLQAVRAGRVFQPTPEERDALSRPGPRLPDALRTLIRFLHPEALK

Sequences:

>Translated_289_residues
MRRVLVLAILALPASAAATTYPLTVTDDLGRTVTLNREPKRIIAMLPSHTETLIAIGAGDKLVAVDRFSNFPKNVTDKLP
KVGSAYQPNLEAILALKPDLVLADESAGSRLTEKLAAAGLTVYGGTAQTYNEVFQKISVLGKLTNHEAGALRLITSMRAE
LNALQKSVVGLPKVSTYYEVDPSPYSVGPNSFIGTLIAKAGGQTIVPARLGDFPKLDPELIVKANPQVMVGLTLEDARKR
PGWQNLQAVRAGRVFQPTPEERDALSRPGPRLPDALRTLIRFLHPEALK
>Mature_289_residues
MRRVLVLAILALPASAAATTYPLTVTDDLGRTVTLNREPKRIIAMLPSHTETLIAIGAGDKLVAVDRFSNFPKNVTDKLP
KVGSAYQPNLEAILALKPDLVLADESAGSRLTEKLAAAGLTVYGGTAQTYNEVFQKISVLGKLTNHEAGALRLITSMRAE
LNALQKSVVGLPKVSTYYEVDPSPYSVGPNSFIGTLIAKAGGQTIVPARLGDFPKLDPELIVKANPQVMVGLTLEDARKR
PGWQNLQAVRAGRVFQPTPEERDALSRPGPRLPDALRTLIRFLHPEALK

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786353, Length=201, Percent_Identity=26.3681592039801, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 31157; Mature: 31157

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRVLVLAILALPASAAATTYPLTVTDDLGRTVTLNREPKRIIAMLPSHTETLIAIGAGD
CCHHHHHHHHHCCCCCCCEEEEEEEECCCCCEEEECCCCCEEEEECCCCCEEEEEEECCC
KLVAVDRFSNFPKNVTDKLPKVGSAYQPNLEAILALKPDLVLADESAGSRLTEKLAAAGL
CEEEEHHHCCCCCHHHHHCCCCCCCCCCCCEEEEEECCCEEEECCCCCHHHHHHHHHCCC
TVYGGTAQTYNEVFQKISVLGKLTNHEAGALRLITSMRAELNALQKSVVGLPKVSTYYEV
EEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
DPSPYSVGPNSFIGTLIAKAGGQTIVPARLGDFPKLDPELIVKANPQVMVGLTLEDARKR
CCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEECCCCEEEEEEHHHHHCC
PGWQNLQAVRAGRVFQPTPEERDALSRPGPRLPDALRTLIRFLHPEALK
CCHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCHHCCC
>Mature Secondary Structure
MRRVLVLAILALPASAAATTYPLTVTDDLGRTVTLNREPKRIIAMLPSHTETLIAIGAGD
CCHHHHHHHHHCCCCCCCEEEEEEEECCCCCEEEECCCCCEEEEECCCCCEEEEEEECCC
KLVAVDRFSNFPKNVTDKLPKVGSAYQPNLEAILALKPDLVLADESAGSRLTEKLAAAGL
CEEEEHHHCCCCCHHHHHCCCCCCCCCCCCEEEEEECCCEEEECCCCCHHHHHHHHHCCC
TVYGGTAQTYNEVFQKISVLGKLTNHEAGALRLITSMRAELNALQKSVVGLPKVSTYYEV
EEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
DPSPYSVGPNSFIGTLIAKAGGQTIVPARLGDFPKLDPELIVKANPQVMVGLTLEDARKR
CCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEECCCCEEEEEEHHHHHCC
PGWQNLQAVRAGRVFQPTPEERDALSRPGPRLPDALRTLIRFLHPEALK
CCHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]