Click here to switch to the map view.

The map label for this gene is ycaC [H]

Identifier: 94314747

GI number: 94314747

Start: 16129

End: 16806

Strand: Direct

Name: ycaC [H]

Synonym: Rmet_5828

Alternate gene names: 94314747

Gene position: 16129-16806 (Clockwise)

Preceding gene: 94314741

Following gene: 94314750

Centisome position: 0.63

GC content: 63.86

Gene sequence:

>678_bases
ATGACCCAACCCGCCAACTTCAACGGCGCCCGTCCCGTGATCGATCCGGCTGATACGGCCATGCTGCTGATCGACCACCA
GAGCGGTCTGTTCCAGACCGTCGGTGACATGCCGATGCCCGAGCTGCGCCAACGTGCCGCCGCGCTGGCGAAAATGGCCA
CGCTGAGCAAGCTGCCAGTGATTACCACGGCTTCGGTGCCGCAAGGCCCCAACGGCCCGCTGATCCCCGAGATCCATGAG
AACGCGCCGCACGCGAAGTACGTTGCGCGCAAGGGCGAGATCAATGCGTGGGACAACCCTGAGTTCGTCGCCGCCGTGAA
GGCCACGGGCAAGAAGACACTGATCATCGCCGGCACCATCACCAGCGTGTGCATGGCGTTCCCGTCCATCAGCGCGGTTG
CCGACGGCTACAAGGTCTTTGCCGTGGTCGATGCCTCGGGCACGTACTCGAAGATGGCGCAGGAAATTACGCTGGCCCGC
GTGGTGCAGGCAGGCGTGGTGCCGATGGATACCGCCGCGGTGGCGTCCGAACTGCAGCGCACCTGGAACCGTGACGATGC
CCAGCAGTGGGCCGAGATCTACACGAAGATCTTCCCCGCGTATCAGTTGCTGATCGAGAGCTACCTGAAGGCGCAGGACG
TGCAGAAGAACGGCGAGGCGCTGGATTCCTCGCGTTGA

Upstream 100 bases:

>100_bases
TCCAAAACTAAGCTGTCGTCATCGACCCGCCATCGTCCCGGCGGCGGGCCCTCTCCCCTTACGGTGGCGTGCCACCACCT
TATGAAGAAGGAGCTTCACC

Downstream 100 bases:

>100_bases
TCGGTTGATCGGCATGGCATGGCCATAGCGGTCATGCCGGCATCGCGCCTCAAGGTAACTTCAAAGCAAGTTCAAGGCAG
GTTCCGGGCGTGCTGCACGT

Product: isochorismatase hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MTQPANFNGARPVIDPADTAMLLIDHQSGLFQTVGDMPMPELRQRAAALAKMATLSKLPVITTASVPQGPNGPLIPEIHE
NAPHAKYVARKGEINAWDNPEFVAAVKATGKKTLIIAGTITSVCMAFPSISAVADGYKVFAVVDASGTYSKMAQEITLAR
VVQAGVVPMDTAAVASELQRTWNRDDAQQWAEIYTKIFPAYQLLIESYLKAQDVQKNGEALDSSR

Sequences:

>Translated_225_residues
MTQPANFNGARPVIDPADTAMLLIDHQSGLFQTVGDMPMPELRQRAAALAKMATLSKLPVITTASVPQGPNGPLIPEIHE
NAPHAKYVARKGEINAWDNPEFVAAVKATGKKTLIIAGTITSVCMAFPSISAVADGYKVFAVVDASGTYSKMAQEITLAR
VVQAGVVPMDTAAVASELQRTWNRDDAQQWAEIYTKIFPAYQLLIESYLKAQDVQKNGEALDSSR
>Mature_224_residues
TQPANFNGARPVIDPADTAMLLIDHQSGLFQTVGDMPMPELRQRAAALAKMATLSKLPVITTASVPQGPNGPLIPEIHEN
APHAKYVARKGEINAWDNPEFVAAVKATGKKTLIIAGTITSVCMAFPSISAVADGYKVFAVVDASGTYSKMAQEITLARV
VQAGVVPMDTAAVASELQRTWNRDDAQQWAEIYTKIFPAYQLLIESYLKAQDVQKNGEALDSSR

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787124, Length=195, Percent_Identity=46.1538461538462, Blast_Score=185, Evalue=3e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 24227; Mature: 24096

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQPANFNGARPVIDPADTAMLLIDHQSGLFQTVGDMPMPELRQRAAALAKMATLSKLPV
CCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCE
ITTASVPQGPNGPLIPEIHENAPHAKYVARKGEINAWDNPEFVAAVKATGKKTLIIAGTI
EEECCCCCCCCCCCCCHHCCCCCCHHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEEHHH
TSVCMAFPSISAVADGYKVFAVVDASGTYSKMAQEITLARVVQAGVVPMDTAAVASELQR
HHHHHHHCCHHHHHCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
TWNRDDAQQWAEIYTKIFPAYQLLIESYLKAQDVQKNGEALDSSR
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TQPANFNGARPVIDPADTAMLLIDHQSGLFQTVGDMPMPELRQRAAALAKMATLSKLPV
CCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCE
ITTASVPQGPNGPLIPEIHENAPHAKYVARKGEINAWDNPEFVAAVKATGKKTLIIAGTI
EEECCCCCCCCCCCCCHHCCCCCCHHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEEHHH
TSVCMAFPSISAVADGYKVFAVVDASGTYSKMAQEITLARVVQAGVVPMDTAAVASELQR
HHHHHHHCCHHHHHCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
TWNRDDAQQWAEIYTKIFPAYQLLIESYLKAQDVQKNGEALDSSR
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3062312; 8905232; 9278503; 9782055 [H]