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The map label for this gene is xerD

Identifier: 94314740

GI number: 94314740

Start: 4514

End: 6094

Strand: Reverse

Name: xerD

Synonym: Rmet_5821

Alternate gene names: NA

Gene position: 6094-4514 (Counterclockwise)

Preceding gene: 94314742

Following gene: 94314737

Centisome position: 0.24

GC content: 63.31

Gene sequence:

>1581_bases
ATGCCTGACGATCGAGATACGCTGGCCGCCACGAAACTGACGCGAACGGAATTTGCCGTCGTGCGGGCGTACGCCCAGGG
CATGAAGCCCCTTGAGATCGCCAACCGGTACCTGCAGGACCCCGACGACGACGACGATCTGACCGAGCACCAGGCCATAC
AACGCATCCTGGCGCTGCGCGATCGGTTGGTCCAGTTCGCTTTGCAGCATGATCGCCCCGATATAGCGGAGATGTTCGAG
GCGCTGCGCGGGCGCTCCGACGCCGGCATGACTCGCCGGGTAGATGCGCTGACTTCGATCGAACAGTTGGGCCAGGGGCG
CCCACTTCCGGGGCATCAGGTCTCCCTCTGGTTCGGCCCCAGCCTGTCTCGACGACTGATGGCAGCCGGCATCCGGACGA
TCGCCGACATGACCGACCTGGCCAATCGAAAAGGCAGCGGCTGGTGGCGTCATGTGCCGCGTATCGGGCGACATTCTGCG
GAGATCATCGTCCGCTGGCTTGCCACGCAATCCGCCCAGACGGCGCTCAAGGTCAGTCCGCATGTGCTCGCATCGGCACA
AATAGTGGATCGTAAAGCACTTTATGCGAGGCCATTGGGACGAGGTATGGCATTCCCTGTTCCGCTTGAACTGATGCGTG
CACCGGAAACATTTGCTCCCTGGGCGATGGCGCTGGGGGAAGAACTCAAAGACGTTCAAGGATGGGTGGCAGCACGGGCG
AGCTCTCCAAACACCTGGAAGAGCTACCGTCGCGAGGCCGAGCGGTTTCTGCTCTGGGCTGCCGGGCAAGGTAAGTCATT
ACGTGCCATGGCTGCCGATGACCTGGATGCGTATCGGGCGTTCCTTGCCAATCCGGAGCCTTCATCATTCTGGTGTGGCC
CGGCCGGTCCGCGTGACAAGGCGCACTGGCGGCCATTCGAAGGGCCATTGCGTACCAGTTCCTGCGAGGCGGCGATGCGG
GTGATCAGCGCGCTGTTGCGGGCATTGCGCAAGGGAGATCCGGCCAGGTTGGCGCGGAGCGGCGTGGTCGATGATGGGAC
TGCCACCGTGCAGGCATCCTCCAAACCGGCGACGTTACCCCGCGAGACGATCGAATCATTCCTGGCCTGGCTGAGTGCCA
GCCCGTCTTCACCACGGCAGCGTGCCGCGTTGGCGGCAGCGCTACTGCTCGCTCGTCACGGAATCCGGATCGTCGAACTG
GCTTCGTTTCGCCTGGTTCATTTTTCCTACTCACCGTCTGCGGCGCCCCCTACGGGCCGGCTGCTGCTCGAAGCAAAGAG
TACGGCGAGGCGTGGCGAGATCGTCCTGGATCAGGATGCGTGGTCCGCCCTGTCGGCCCATTGGACGGACCGACAACTGG
CGTGGGATACGTTGAGTGAGGGATGGGATCCTGATGCCGCGTTGCTGGCGCCGATCGAGTACCCGTCGACAGCTCGGGGG
CGAGCCAAGCAATCGATAGCGACGGCAGGTTACTCGGCCAGTGGCTTGGAGCAATTGCTCCGGGCAAGCTGGAGACGTTT
TGCCGAGACGCACGACGTCGACGTGGAAGCCTTCACGCCGAGGCAGTTGCGGTTGGGGTGA

Upstream 100 bases:

>100_bases
TGTAATTCAGTCACTTATGTGCGGATGGCCAATGTCGGCGTTCGCGCACGCCGGACGAAATCCCAAGCGCACAAAGTGCA
TTCAGAGGCCATAGACCCCC

Downstream 100 bases:

>100_bases
TTGCGATCCAATAGAGCAGTTTCGTCACCCGATTGGATCGCAATGGATCCTCATGGTTGGAAGATGCTCAGATCAGCGTC
TTGTCCAACCCGAAGCGGGC

Product: tyrosine-based site-specific recombinase XerD

Products: NA

Alternate protein names: Integrase Family Protein; Integrase/Recombinase Protein; Phage Integrase; Integrase/Recombinase; Phage IntegrasePhage Integrase N-Terminal SAM-Like; Integrase / Recombinase Protein; Site-Specific Recombinase Phage Integrase Family; Tyrosine-Based Site-Specific Recombinase XerD; Integrase; Integrase Domain-Containing Protein; Phage Integrase Family; Tyrosine-Based Site-Specific Recombinase

Number of amino acids: Translated: 526; Mature: 525

Protein sequence:

>526_residues
MPDDRDTLAATKLTRTEFAVVRAYAQGMKPLEIANRYLQDPDDDDDLTEHQAIQRILALRDRLVQFALQHDRPDIAEMFE
ALRGRSDAGMTRRVDALTSIEQLGQGRPLPGHQVSLWFGPSLSRRLMAAGIRTIADMTDLANRKGSGWWRHVPRIGRHSA
EIIVRWLATQSAQTALKVSPHVLASAQIVDRKALYARPLGRGMAFPVPLELMRAPETFAPWAMALGEELKDVQGWVAARA
SSPNTWKSYRREAERFLLWAAGQGKSLRAMAADDLDAYRAFLANPEPSSFWCGPAGPRDKAHWRPFEGPLRTSSCEAAMR
VISALLRALRKGDPARLARSGVVDDGTATVQASSKPATLPRETIESFLAWLSASPSSPRQRAALAAALLLARHGIRIVEL
ASFRLVHFSYSPSAAPPTGRLLLEAKSTARRGEIVLDQDAWSALSAHWTDRQLAWDTLSEGWDPDAALLAPIEYPSTARG
RAKQSIATAGYSASGLEQLLRASWRRFAETHDVDVEAFTPRQLRLG

Sequences:

>Translated_526_residues
MPDDRDTLAATKLTRTEFAVVRAYAQGMKPLEIANRYLQDPDDDDDLTEHQAIQRILALRDRLVQFALQHDRPDIAEMFE
ALRGRSDAGMTRRVDALTSIEQLGQGRPLPGHQVSLWFGPSLSRRLMAAGIRTIADMTDLANRKGSGWWRHVPRIGRHSA
EIIVRWLATQSAQTALKVSPHVLASAQIVDRKALYARPLGRGMAFPVPLELMRAPETFAPWAMALGEELKDVQGWVAARA
SSPNTWKSYRREAERFLLWAAGQGKSLRAMAADDLDAYRAFLANPEPSSFWCGPAGPRDKAHWRPFEGPLRTSSCEAAMR
VISALLRALRKGDPARLARSGVVDDGTATVQASSKPATLPRETIESFLAWLSASPSSPRQRAALAAALLLARHGIRIVEL
ASFRLVHFSYSPSAAPPTGRLLLEAKSTARRGEIVLDQDAWSALSAHWTDRQLAWDTLSEGWDPDAALLAPIEYPSTARG
RAKQSIATAGYSASGLEQLLRASWRRFAETHDVDVEAFTPRQLRLG
>Mature_525_residues
PDDRDTLAATKLTRTEFAVVRAYAQGMKPLEIANRYLQDPDDDDDLTEHQAIQRILALRDRLVQFALQHDRPDIAEMFEA
LRGRSDAGMTRRVDALTSIEQLGQGRPLPGHQVSLWFGPSLSRRLMAAGIRTIADMTDLANRKGSGWWRHVPRIGRHSAE
IIVRWLATQSAQTALKVSPHVLASAQIVDRKALYARPLGRGMAFPVPLELMRAPETFAPWAMALGEELKDVQGWVAARAS
SPNTWKSYRREAERFLLWAAGQGKSLRAMAADDLDAYRAFLANPEPSSFWCGPAGPRDKAHWRPFEGPLRTSSCEAAMRV
ISALLRALRKGDPARLARSGVVDDGTATVQASSKPATLPRETIESFLAWLSASPSSPRQRAALAAALLLARHGIRIVELA
SFRLVHFSYSPSAAPPTGRLLLEAKSTARRGEIVLDQDAWSALSAHWTDRQLAWDTLSEGWDPDAALLAPIEYPSTARGR
AKQSIATAGYSASGLEQLLRASWRRFAETHDVDVEAFTPRQLRLG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 58121; Mature: 57989

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDDRDTLAATKLTRTEFAVVRAYAQGMKPLEIANRYLQDPDDDDDLTEHQAIQRILALR
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
DRLVQFALQHDRPDIAEMFEALRGRSDAGMTRRVDALTSIEQLGQGRPLPGHQVSLWFGP
HHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC
SLSRRLMAAGIRTIADMTDLANRKGSGWWRHVPRIGRHSAEIIVRWLATQSAQTALKVSP
CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCHHCCHHHHHHHHHHHHHHHHHHHCCCC
HVLASAQIVDRKALYARPLGRGMAFPVPLELMRAPETFAPWAMALGEELKDVQGWVAARA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC
SSPNTWKSYRREAERFLLWAAGQGKSLRAMAADDLDAYRAFLANPEPSSFWCGPAGPRDK
CCCHHHHHHHHHHHHEEEEECCCCCCEEHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCC
AHWRPFEGPLRTSSCEAAMRVISALLRALRKGDPARLARSGVVDDGTATVQASSKPATLP
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCEEEECCCCCCCC
RETIESFLAWLSASPSSPRQRAALAAALLLARHGIRIVELASFRLVHFSYSPSAAPPTGR
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEECEEEEEEECCCCCCCCCCE
LLLEAKSTARRGEIVLDQDAWSALSAHWTDRQLAWDTLSEGWDPDAALLAPIEYPSTARG
EEEEEHHCCCCCCEEECCHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCH
RAKQSIATAGYSASGLEQLLRASWRRFAETHDVDVEAFTPRQLRLG
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCC
>Mature Secondary Structure 
PDDRDTLAATKLTRTEFAVVRAYAQGMKPLEIANRYLQDPDDDDDLTEHQAIQRILALR
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
DRLVQFALQHDRPDIAEMFEALRGRSDAGMTRRVDALTSIEQLGQGRPLPGHQVSLWFGP
HHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC
SLSRRLMAAGIRTIADMTDLANRKGSGWWRHVPRIGRHSAEIIVRWLATQSAQTALKVSP
CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCHHCCHHHHHHHHHHHHHHHHHHHCCCC
HVLASAQIVDRKALYARPLGRGMAFPVPLELMRAPETFAPWAMALGEELKDVQGWVAARA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC
SSPNTWKSYRREAERFLLWAAGQGKSLRAMAADDLDAYRAFLANPEPSSFWCGPAGPRDK
CCCHHHHHHHHHHHHEEEEECCCCCCEEHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCC
AHWRPFEGPLRTSSCEAAMRVISALLRALRKGDPARLARSGVVDDGTATVQASSKPATLP
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCEEEECCCCCCCC
RETIESFLAWLSASPSSPRQRAALAAALLLARHGIRIVELASFRLVHFSYSPSAAPPTGR
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEECEEEEEEECCCCCCCCCCE
LLLEAKSTARRGEIVLDQDAWSALSAHWTDRQLAWDTLSEGWDPDAALLAPIEYPSTARG
EEEEEHHCCCCCCEEECCHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCH
RAKQSIATAGYSASGLEQLLRASWRRFAETHDVDVEAFTPRQLRLG
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA