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The map label for this gene is yjiR [C]

Identifier: 94314713

GI number: 94314713

Start: 2550556

End: 2551953

Strand: Direct

Name: yjiR [C]

Synonym: Rmet_5794

Alternate gene names: 94314713

Gene position: 2550556-2551953 (Clockwise)

Preceding gene: 94314708

Following gene: 94314715

Centisome position: 98.86

GC content: 68.53

Gene sequence:

>1398_bases
GTGCGTACAAAGACATCCGCGCTTACAGGCAAGCCGGCCTGGATCGGCGAGTTCAGCCCGACCGGCGGGCCGCGCTATCT
GCAGATCGCGGGATTCCTCGAACACGCGGTGGCGGACGGGCGGCTCTCTCCCGGGGACCGGCTGGCGCCTCAGCGAGAAC
TGGCAGCAATGCTTGGCGTGGACCTGACCACGGTGACGCGGGCGCTGGCCGAGGCGCGGCGCCGCCGGCTGGTCGAACCA
CGCGGCTCGCTCGGCACCTTCGTCGCCGCGCCGGTCTTCGAACTGGCCCAGACTGTGGACCTGAGCATGAACGTGCCACC
ACCGCCGGAGAGCATCGACTTCGACGACATGCTCCGGCGCGGGTTGGCGCAGGTGACGCTGCACGCGGACGCCAGCCTGT
TAATGACCTACCAGTTGGGCGGCGGCACCCAGCCGGATCGCGAAGCCGGTGCGCGGTGGCTCGGACCGATGCTTGGAACG
GTAGCGTCCTCACGCGTGATCGCCAGTCCCGGCGCCCAATCGGCGTTGTCGGCAGTGATCCTCAGCCTCAGCGACCCCCG
GTCAGTCATCGCGGCGGAGCCGCTGATCTATCCGGGGCTGCGCGCGGCGGCGGCGCAAACGGGGCGGCGCGTGGTGACGG
TGGCGACAGATGACGACGGAATGCGCCCCGACGCGCTCGAGGCCGCTTGCCGCGCGCACGCGATTCGGCTCATCTACCTG
AACCCGACGCTGCAGAATCCCACCACGCACACGATGCCCGAGCACCGTCGGCGTGACATCGCACGGGTGGCCGCCCGGTG
CGGCGCGCGGATCATCGAGGACGACCCGTACTGGCTGCTCACGCCCGACGCGCCGCCCCCGGTGGCCGCACTCGCGCCGG
CGCAAACGATTCATATCGCGACCCTGTCGAAATGCCTGAGCCCCGGATTGCGCACCGCATACGTGGTGGCGCCCGATGTC
GACACGCAGGAATTGATTCTGGCCGCGCTACGCGCGATCACCCTCATGGCGTCGCCGATTGCCACCGCGCTTGCCACGCA
GTGGATTCGCGATGGGTCCGCCGAGGCATTGCTGAACGGCATTCGCAGCGAAGCGGCGGCGCGGCAGCAGATGGCGCGGC
AATGGCTGATCGGTGCAGACCAGTCGCCGCAATCTGGCATCCATGTGTGGCACCCGTTGCCAAGTTACTGGACGTCGAGC
GGATTCAGCCGCGCGGCCAGCGACGAGCACCTGCGGGTGACCGCATCGGATGCGTTTTCCGATGGAGCCGATGCGCCCAA
CGCCATTCGTATATCGCTCGGCGGCGTGGCGGAGCGCGCGCAGCTTTCGATGGCGCTCAAGAAACTGTCGGGGTTGCTCG
CACGCAAGCCGCCACACGCAATGCTGCAGGTGATCTAG

Upstream 100 bases:

>100_bases
ATTGATGGGGGCACAGGCGTATTCCGGGTATTTGTATGGATTGGCCTGAGGTGCGCGGGATGCTAAGGTAAGACAACATC
CATACAAGACGGATTTTTCG

Downstream 100 bases:

>100_bases
TCCGCCGTATCAGTGCACGACCGCCAGCAGGCCCGCGATGCCGAACCCCAGCGCGGCCAGCGCATCGCCGGCGATCAGTC
CGCCACCGACCAGCGATGTC

Product: GntR family transcriptional regulato

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 465; Mature: 465

Protein sequence:

>465_residues
MRTKTSALTGKPAWIGEFSPTGGPRYLQIAGFLEHAVADGRLSPGDRLAPQRELAAMLGVDLTTVTRALAEARRRRLVEP
RGSLGTFVAAPVFELAQTVDLSMNVPPPPESIDFDDMLRRGLAQVTLHADASLLMTYQLGGGTQPDREAGARWLGPMLGT
VASSRVIASPGAQSALSAVILSLSDPRSVIAAEPLIYPGLRAAAAQTGRRVVTVATDDDGMRPDALEAACRAHAIRLIYL
NPTLQNPTTHTMPEHRRRDIARVAARCGARIIEDDPYWLLTPDAPPPVAALAPAQTIHIATLSKCLSPGLRTAYVVAPDV
DTQELILAALRAITLMASPIATALATQWIRDGSAEALLNGIRSEAAARQQMARQWLIGADQSPQSGIHVWHPLPSYWTSS
GFSRAASDEHLRVTASDAFSDGADAPNAIRISLGGVAERAQLSMALKKLSGLLARKPPHAMLQVI

Sequences:

>Translated_465_residues
MRTKTSALTGKPAWIGEFSPTGGPRYLQIAGFLEHAVADGRLSPGDRLAPQRELAAMLGVDLTTVTRALAEARRRRLVEP
RGSLGTFVAAPVFELAQTVDLSMNVPPPPESIDFDDMLRRGLAQVTLHADASLLMTYQLGGGTQPDREAGARWLGPMLGT
VASSRVIASPGAQSALSAVILSLSDPRSVIAAEPLIYPGLRAAAAQTGRRVVTVATDDDGMRPDALEAACRAHAIRLIYL
NPTLQNPTTHTMPEHRRRDIARVAARCGARIIEDDPYWLLTPDAPPPVAALAPAQTIHIATLSKCLSPGLRTAYVVAPDV
DTQELILAALRAITLMASPIATALATQWIRDGSAEALLNGIRSEAAARQQMARQWLIGADQSPQSGIHVWHPLPSYWTSS
GFSRAASDEHLRVTASDAFSDGADAPNAIRISLGGVAERAQLSMALKKLSGLLARKPPHAMLQVI
>Mature_465_residues
MRTKTSALTGKPAWIGEFSPTGGPRYLQIAGFLEHAVADGRLSPGDRLAPQRELAAMLGVDLTTVTRALAEARRRRLVEP
RGSLGTFVAAPVFELAQTVDLSMNVPPPPESIDFDDMLRRGLAQVTLHADASLLMTYQLGGGTQPDREAGARWLGPMLGT
VASSRVIASPGAQSALSAVILSLSDPRSVIAAEPLIYPGLRAAAAQTGRRVVTVATDDDGMRPDALEAACRAHAIRLIYL
NPTLQNPTTHTMPEHRRRDIARVAARCGARIIEDDPYWLLTPDAPPPVAALAPAQTIHIATLSKCLSPGLRTAYVVAPDV
DTQELILAALRAITLMASPIATALATQWIRDGSAEALLNGIRSEAAARQQMARQWLIGADQSPQSGIHVWHPLPSYWTSS
GFSRAASDEHLRVTASDAFSDGADAPNAIRISLGGVAERAQLSMALKKLSGLLARKPPHAMLQVI

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=243, Percent_Identity=22.6337448559671, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI33469970, Length=243, Percent_Identity=22.6337448559671, Blast_Score=74, Evalue=2e-13,
Organism=Escherichia coli, GI1790797, Length=453, Percent_Identity=23.841059602649, Blast_Score=102, Evalue=6e-23,
Organism=Escherichia coli, GI1787710, Length=471, Percent_Identity=25.4777070063694, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 49551; Mature: 49551

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTKTSALTGKPAWIGEFSPTGGPRYLQIAGFLEHAVADGRLSPGDRLAPQRELAAMLGV
CCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC
DLTTVTRALAEARRRRLVEPRGSLGTFVAAPVFELAQTVDLSMNVPPPPESIDFDDMLRR
CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
GLAQVTLHADASLLMTYQLGGGTQPDREAGARWLGPMLGTVASSRVIASPGAQSALSAVI
HHHHEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHH
LSLSDPRSVIAAEPLIYPGLRAAAAQTGRRVVTVATDDDGMRPDALEAACRAHAIRLIYL
HHCCCCHHHHHCCCCCCCCHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHCEEEEEEE
NPTLQNPTTHTMPEHRRRDIARVAARCGARIIEDDPYWLLTPDAPPPVAALAPAQTIHIA
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCEEECCCCCCCCHHHCCCCEEHHH
TLSKCLSPGLRTAYVVAPDVDTQELILAALRAITLMASPIATALATQWIRDGSAEALLNG
HHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
IRSEAAARQQMARQWLIGADQSPQSGIHVWHPLPSYWTSSGFSRAASDEHLRVTASDAFS
HHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHCCCCCCCCCCCCEEEEECCCCC
DGADAPNAIRISLGGVAERAQLSMALKKLSGLLARKPPHAMLQVI
CCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCC
>Mature Secondary Structure
MRTKTSALTGKPAWIGEFSPTGGPRYLQIAGFLEHAVADGRLSPGDRLAPQRELAAMLGV
CCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC
DLTTVTRALAEARRRRLVEPRGSLGTFVAAPVFELAQTVDLSMNVPPPPESIDFDDMLRR
CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
GLAQVTLHADASLLMTYQLGGGTQPDREAGARWLGPMLGTVASSRVIASPGAQSALSAVI
HHHHEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHH
LSLSDPRSVIAAEPLIYPGLRAAAAQTGRRVVTVATDDDGMRPDALEAACRAHAIRLIYL
HHCCCCHHHHHCCCCCCCCHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHCEEEEEEE
NPTLQNPTTHTMPEHRRRDIARVAARCGARIIEDDPYWLLTPDAPPPVAALAPAQTIHIA
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCEEECCCCCCCCHHHCCCCEEHHH
TLSKCLSPGLRTAYVVAPDVDTQELILAALRAITLMASPIATALATQWIRDGSAEALLNG
HHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
IRSEAAARQQMARQWLIGADQSPQSGIHVWHPLPSYWTSSGFSRAASDEHLRVTASDAFS
HHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHCCCCCCCCCCCCEEEEECCCCC
DGADAPNAIRISLGGVAERAQLSMALKKLSGLLARKPPHAMLQVI
CCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1400197 [H]