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The map label for this gene is yciR [C]

Identifier: 94314669

GI number: 94314669

Start: 2509984

End: 2511729

Strand: Reverse

Name: yciR [C]

Synonym: Rmet_5750

Alternate gene names: 94314669

Gene position: 2511729-2509984 (Counterclockwise)

Preceding gene: 94314671

Following gene: 291481604

Centisome position: 97.35

GC content: 63.8

Gene sequence:

>1746_bases
ATGTGGCATCGAAAGCCTGTGAATTCGCTGGAGCCAGCGCTTTGCGCAGATCTGGTTGCTGGCGAACGTAAGTTATCACG
TTCGCCTGATGATGAAAGTCCGGAGAAACCGGGTTTGACAGCCTGCGTTCCATGCGTCTCTTGTCATCGAAAACGAATCG
ACCGCTACTGTGCGGGCGCAAGCACACAAGGTATAGTGCGCCAGACACGGTGTTCTTCGGGTGTCCATCGCCAGAGAAAG
GGCCCACAACGCCTCCACTGCTGTTTCATTCTTTCGTTCATGCAACCGCTCTTGTCACCGCTCGTCTGGCTTCCGCTGCT
ACTCGCGACGGCTGCGGTCATGCTGGCGGGATGGCTCGCAGGCCGTCTTCGGCGTGAGCGCCAGGAAGCGCGCAAGCAAG
CGACGCTTGCGGATGCCTATATCAGCCACATGGCAAAGCACGATGCGCTGACGGGGCTGCCAAACCGGTCGGAACTGCAT
GAGCGATGCGAAGTACTGCTCGCGGAAGCGCGCCGTCGTGGCAGTGGTGTGGCGCTGCTGTTGCTCGATCTCGACCATTT
CAAACACATCAATGAAACGCTCGGCCATCCCGTGGGGGACGACCTGCTGCGGACCATCGCCGACCGCATTCGCGGGGCGG
TGCGGCCCCGCGATGTGGTGGCGCGCATGGGCGGCGACGAATTTGCCGTGGCGCTTGGAGACTTGCGCTTCGATGGCGAG
GCCGAGCTGGTGGCTGCCAAGATTCTTGCGCGCGTGTCCGAGGACCTGCCGCTGGCGGGCGAACATGTTCGCGTCACGCC
CTCGCTCGGCATGGCGATCTTTCCCCAGGATGGCAATTCGCTGACGGACCTGATGAAATCGGCCGACGCGGCGATGTATG
CCGCCAAGCATGGCGGGCGCGCCCAACTGCGGCGTTTTGCCAGCGAGATGGCGGAGGCATCGCGGACGCGCTTCACGATC
GAGGGGTTGCTCCGTCGCGCGCTGGCCAAGGGGGAGTTCCGGTTGCGCTACCAGCCGATCGTCGACGTTTCCAGGCTGGC
GTTGCTCGGGGTCGAGGCCCTGATCGCCTGGGAGACCCCCGAGCGCGGCGTGATGCAGCCGTCTGAGTTCATCCCGATCG
CCGAGCAGTGCGGTCTCGTCAGCGAGCTTGGCGAGTGGGTGCTGGGCAAGGCTTGCCAGGATATCCAGTCGGTGCGTCAG
GAGCTGGGGTGCGATATCGATGTCGCGGTCAATATTTCGCCGCTGCAATTGCGTCAGGCAAGTTTCCCGGCGGCCGTTGC
GCAGGCGTTGCGCGCTTCCGGGCTGCCGGCCGCCAGTCTGACCATCGAGGTGACCGAGGGCATTCTCGTCGACGGCAGCG
AGACCACCGTCGAGACGCTCCGGCAGGTGCGCCAGCTGGGCGTGGGGATTTCGATCGACGACTTCGGTACGGGCTACTCG
GGGCTTGGGTATCTGACCCGCCTGCCAATCAGCAAGCTCAAGATCGACAAGTCGTTCGTCGATGATCTCGCCGTGCCGGG
ACACGACCGGGCGGTGGCCGCGGCCATCGTCGCGCTCGGGCGCCAGTTGCATCTGCAGGTGGTGGCCGAGGGCGTGGAGA
CAAAAGCGCAGTTCGATTTCCTGCGCGCCGAAGGATGCGATGCCGTGCAGGGTTACCTGTTCAGCCAGCCGGTTGGACTG
GATACGCTGCGTCAGATCCTGCGTGGCGATAGCAGTCTGGCCAATGCGGACGTGCTTGCGGCCTGA

Upstream 100 bases:

>100_bases
CGATGCCTCCGCCGAGAATGCCGGCAAGCACCGTGGTGATCAGCGCAATGCGTACCTTGAGCGACGGCAGTAACCGGGGC
ATGTGAGTGTCACGGAGTCG

Downstream 100 bases:

>100_bases
CATGGCGGCATGACGTCTGGCACGCCGTGGGCGCCCGCAGAAACGGGTACGCAACGTCACGCACGCATCGGGTGGATACG
CGGTGGCTGAGACGTTTGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 581; Mature: 581

Protein sequence:

>581_residues
MWHRKPVNSLEPALCADLVAGERKLSRSPDDESPEKPGLTACVPCVSCHRKRIDRYCAGASTQGIVRQTRCSSGVHRQRK
GPQRLHCCFILSFMQPLLSPLVWLPLLLATAAVMLAGWLAGRLRRERQEARKQATLADAYISHMAKHDALTGLPNRSELH
ERCEVLLAEARRRGSGVALLLLDLDHFKHINETLGHPVGDDLLRTIADRIRGAVRPRDVVARMGGDEFAVALGDLRFDGE
AELVAAKILARVSEDLPLAGEHVRVTPSLGMAIFPQDGNSLTDLMKSADAAMYAAKHGGRAQLRRFASEMAEASRTRFTI
EGLLRRALAKGEFRLRYQPIVDVSRLALLGVEALIAWETPERGVMQPSEFIPIAEQCGLVSELGEWVLGKACQDIQSVRQ
ELGCDIDVAVNISPLQLRQASFPAAVAQALRASGLPAASLTIEVTEGILVDGSETTVETLRQVRQLGVGISIDDFGTGYS
GLGYLTRLPISKLKIDKSFVDDLAVPGHDRAVAAAIVALGRQLHLQVVAEGVETKAQFDFLRAEGCDAVQGYLFSQPVGL
DTLRQILRGDSSLANADVLAA

Sequences:

>Translated_581_residues
MWHRKPVNSLEPALCADLVAGERKLSRSPDDESPEKPGLTACVPCVSCHRKRIDRYCAGASTQGIVRQTRCSSGVHRQRK
GPQRLHCCFILSFMQPLLSPLVWLPLLLATAAVMLAGWLAGRLRRERQEARKQATLADAYISHMAKHDALTGLPNRSELH
ERCEVLLAEARRRGSGVALLLLDLDHFKHINETLGHPVGDDLLRTIADRIRGAVRPRDVVARMGGDEFAVALGDLRFDGE
AELVAAKILARVSEDLPLAGEHVRVTPSLGMAIFPQDGNSLTDLMKSADAAMYAAKHGGRAQLRRFASEMAEASRTRFTI
EGLLRRALAKGEFRLRYQPIVDVSRLALLGVEALIAWETPERGVMQPSEFIPIAEQCGLVSELGEWVLGKACQDIQSVRQ
ELGCDIDVAVNISPLQLRQASFPAAVAQALRASGLPAASLTIEVTEGILVDGSETTVETLRQVRQLGVGISIDDFGTGYS
GLGYLTRLPISKLKIDKSFVDDLAVPGHDRAVAAAIVALGRQLHLQVVAEGVETKAQFDFLRAEGCDAVQGYLFSQPVGL
DTLRQILRGDSSLANADVLAA
>Mature_581_residues
MWHRKPVNSLEPALCADLVAGERKLSRSPDDESPEKPGLTACVPCVSCHRKRIDRYCAGASTQGIVRQTRCSSGVHRQRK
GPQRLHCCFILSFMQPLLSPLVWLPLLLATAAVMLAGWLAGRLRRERQEARKQATLADAYISHMAKHDALTGLPNRSELH
ERCEVLLAEARRRGSGVALLLLDLDHFKHINETLGHPVGDDLLRTIADRIRGAVRPRDVVARMGGDEFAVALGDLRFDGE
AELVAAKILARVSEDLPLAGEHVRVTPSLGMAIFPQDGNSLTDLMKSADAAMYAAKHGGRAQLRRFASEMAEASRTRFTI
EGLLRRALAKGEFRLRYQPIVDVSRLALLGVEALIAWETPERGVMQPSEFIPIAEQCGLVSELGEWVLGKACQDIQSVRQ
ELGCDIDVAVNISPLQLRQASFPAAVAQALRASGLPAASLTIEVTEGILVDGSETTVETLRQVRQLGVGISIDDFGTGYS
GLGYLTRLPISKLKIDKSFVDDLAVPGHDRAVAAAIVALGRQLHLQVVAEGVETKAQFDFLRAEGCDAVQGYLFSQPVGL
DTLRQILRGDSSLANADVLAA

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=415, Percent_Identity=36.144578313253, Blast_Score=264, Evalue=1e-71,
Organism=Escherichia coli, GI87081921, Length=421, Percent_Identity=33.4916864608076, Blast_Score=247, Evalue=2e-66,
Organism=Escherichia coli, GI226510982, Length=419, Percent_Identity=32.2195704057279, Blast_Score=207, Evalue=2e-54,
Organism=Escherichia coli, GI1787055, Length=237, Percent_Identity=37.1308016877637, Blast_Score=153, Evalue=2e-38,
Organism=Escherichia coli, GI87081845, Length=249, Percent_Identity=34.136546184739, Blast_Score=146, Evalue=3e-36,
Organism=Escherichia coli, GI1790496, Length=233, Percent_Identity=34.3347639484979, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI87081980, Length=270, Percent_Identity=32.962962962963, Blast_Score=139, Evalue=6e-34,
Organism=Escherichia coli, GI1788502, Length=244, Percent_Identity=33.1967213114754, Blast_Score=137, Evalue=2e-33,
Organism=Escherichia coli, GI1786507, Length=232, Percent_Identity=31.8965517241379, Blast_Score=129, Evalue=5e-31,
Organism=Escherichia coli, GI1788849, Length=268, Percent_Identity=32.8358208955224, Blast_Score=122, Evalue=5e-29,
Organism=Escherichia coli, GI87081743, Length=234, Percent_Identity=32.4786324786325, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI1788381, Length=178, Percent_Identity=34.8314606741573, Blast_Score=108, Evalue=8e-25,
Organism=Escherichia coli, GI87082096, Length=424, Percent_Identity=25.2358490566038, Blast_Score=103, Evalue=4e-23,
Organism=Escherichia coli, GI1787262, Length=165, Percent_Identity=33.9393939393939, Blast_Score=102, Evalue=9e-23,
Organism=Escherichia coli, GI1786584, Length=202, Percent_Identity=30.1980198019802, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI145693134, Length=164, Percent_Identity=35.9756097560976, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI1788956, Length=183, Percent_Identity=34.9726775956284, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI87081881, Length=168, Percent_Identity=36.3095238095238, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87082007, Length=170, Percent_Identity=35.8823529411765, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1788085, Length=161, Percent_Identity=30.4347826086957, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI87081974, Length=158, Percent_Identity=31.0126582278481, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1787802, Length=163, Percent_Identity=34.3558282208589, Blast_Score=76, Evalue=6e-15,
Organism=Escherichia coli, GI1787410, Length=159, Percent_Identity=28.3018867924528, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787816, Length=155, Percent_Identity=35.4838709677419, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI87081977, Length=117, Percent_Identity=34.1880341880342, Blast_Score=73, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 63129; Mature: 63129

Theoretical pI: Translated: 7.32; Mature: 7.32

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWHRKPVNSLEPALCADLVAGERKLSRSPDDESPEKPGLTACVPCVSCHRKRIDRYCAGA
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
STQGIVRQTRCSSGVHRQRKGPQRLHCCFILSFMQPLLSPLVWLPLLLATAAVMLAGWLA
CCHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRLRRERQEARKQATLADAYISHMAKHDALTGLPNRSELHERCEVLLAEARRRGSGVALL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEE
LLDLDHFKHINETLGHPVGDDLLRTIADRIRGAVRPRDVVARMGGDEFAVALGDLRFDGE
EEECHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEECEEECCC
AELVAAKILARVSEDLPLAGEHVRVTPSLGMAIFPQDGNSLTDLMKSADAAMYAAKHGGR
HHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCH
AQLRRFASEMAEASRTRFTIEGLLRRALAKGEFRLRYQPIVDVSRLALLGVEALIAWETP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHEEECCC
ERGVMQPSEFIPIAEQCGLVSELGEWVLGKACQDIQSVRQELGCDIDVAVNISPLQLRQA
CCCCCCCHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
SFPAAVAQALRASGLPAASLTIEVTEGILVDGSETTVETLRQVRQLGVGISIDDFGTGYS
CCCHHHHHHHHHCCCCCCEEEEEEECCEEECCCHHHHHHHHHHHHHCCCCEECCCCCCCC
GLGYLTRLPISKLKIDKSFVDDLAVPGHDRAVAAAIVALGRQLHLQVVAEGVETKAQFDF
CCHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRAEGCDAVQGYLFSQPVGLDTLRQILRGDSSLANADVLAA
HHHCCCCHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MWHRKPVNSLEPALCADLVAGERKLSRSPDDESPEKPGLTACVPCVSCHRKRIDRYCAGA
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
STQGIVRQTRCSSGVHRQRKGPQRLHCCFILSFMQPLLSPLVWLPLLLATAAVMLAGWLA
CCHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRLRRERQEARKQATLADAYISHMAKHDALTGLPNRSELHERCEVLLAEARRRGSGVALL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEE
LLDLDHFKHINETLGHPVGDDLLRTIADRIRGAVRPRDVVARMGGDEFAVALGDLRFDGE
EEECHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEECEEECCC
AELVAAKILARVSEDLPLAGEHVRVTPSLGMAIFPQDGNSLTDLMKSADAAMYAAKHGGR
HHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCH
AQLRRFASEMAEASRTRFTIEGLLRRALAKGEFRLRYQPIVDVSRLALLGVEALIAWETP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHEEECCC
ERGVMQPSEFIPIAEQCGLVSELGEWVLGKACQDIQSVRQELGCDIDVAVNISPLQLRQA
CCCCCCCHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
SFPAAVAQALRASGLPAASLTIEVTEGILVDGSETTVETLRQVRQLGVGISIDDFGTGYS
CCCHHHHHHHHHCCCCCCEEEEEEECCEEECCCHHHHHHHHHHHHHCCCCEECCCCCCCC
GLGYLTRLPISKLKIDKSFVDDLAVPGHDRAVAAAIVALGRQLHLQVVAEGVETKAQFDF
CCHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRAEGCDAVQGYLFSQPVGLDTLRQILRGDSSLANADVLAA
HHHCCCCHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]