Click here to switch to the map view.

The map label for this gene is ltrA [H]

Identifier: 94314585

GI number: 94314585

Start: 2425305

End: 2426225

Strand: Direct

Name: ltrA [H]

Synonym: Rmet_5666

Alternate gene names: 94314585

Gene position: 2425305-2426225 (Clockwise)

Preceding gene: 291481599

Following gene: 94314586

Centisome position: 94.0

GC content: 66.45

Gene sequence:

>921_bases
ATGCATACCATGACGCGAAACGAACCGAGCTGGGAGTGGTACCGGACATTCTTGCAGGTGCTGGAGGTCGGCTCGCTCTC
CGCCGCCGGCCGGGCCCTCGGCATCACGCAGCCCACTGTCGGGCGGCACATCGACAGCCTCGAGTCGGCCCTTGGGCTGA
AGCTGTTCACGCGCTCGTTCGACGGCTTCGCCCCCACCGAGGCCGCCCATGAACTGAAGCCATACGCGGCGAGCATCGCC
GCCACCGCCGCCGCGCTGCGCCGGGTGGCCAGCAGCCACGGCGCGGGCGTCCGGGGCACCGTACGGCTGACCGCGAGCGA
AGTCATCGGCGCCGAGGTACTGCCTCCGATCCTGGCGGCCCTGCGCGACGCGCATCCGGAGCTGGTGGTCGAACTCGTCC
TGTCGAATCAGCCTGACGACCTGTTGCGCCGCGAAGCGGACATCGCCATCCGCATGTTCCGACCGGTCCAGGGAGCCTTG
ATCGCCCGACATGTCGGCGGTATTGAAATCGGCTTGCACGCGCACAGTCGCTATCTGCAGGCGCACGGCGTGCCGGGCTC
GACGAGCGAGCTCTCGCGCCATGCGCTCATCGGCTTCGATCAGGAAAACGACTTCATCCGCCGGTTGCAGAGCAAATTCA
AACCCTTCTGGCGCGATAGCCTGGCCTTTCGCAGCGACAGCGACCTGGCCCAACTCGGCGCCATCCGCGCGGGATTTGGC
ATTGGCGTGTGCCAGGCCGCACTGGCGGCACGGGATCCCCAACTGGTGAGGGTGTTGCCCGAGCAGTTCTCGGTCACGCT
GGATACCTGGGTAGCCATGCATGAAGACCTGCGTGACAACACACGCTGTGCCGTCACCTTCGCCGCGCTGGTCAATGGGC
TGGACGCCTATATCAAAGGTGTTCCCGGGCGAGGGGCATGA

Upstream 100 bases:

>100_bases
GTAACGGATTGGGAAGGCAGCGAGCAATTCGCGAAACCGCAGTGTGGCGCACCCGCAATCGAAAGAAAATTGCCTAGAAT
CGACTGGCTGCTATTTGAAA

Downstream 100 bases:

>100_bases
CCGCAATGCCCGAACATTCGCAGACGTCGGCCTGAAACGGATGGCACCCGTCGCACTCTGCAAAATCAGGAATCATCCCG
ACAAGAAACTTTCATAACGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MHTMTRNEPSWEWYRTFLQVLEVGSLSAAGRALGITQPTVGRHIDSLESALGLKLFTRSFDGFAPTEAAHELKPYAASIA
ATAAALRRVASSHGAGVRGTVRLTASEVIGAEVLPPILAALRDAHPELVVELVLSNQPDDLLRREADIAIRMFRPVQGAL
IARHVGGIEIGLHAHSRYLQAHGVPGSTSELSRHALIGFDQENDFIRRLQSKFKPFWRDSLAFRSDSDLAQLGAIRAGFG
IGVCQAALAARDPQLVRVLPEQFSVTLDTWVAMHEDLRDNTRCAVTFAALVNGLDAYIKGVPGRGA

Sequences:

>Translated_306_residues
MHTMTRNEPSWEWYRTFLQVLEVGSLSAAGRALGITQPTVGRHIDSLESALGLKLFTRSFDGFAPTEAAHELKPYAASIA
ATAAALRRVASSHGAGVRGTVRLTASEVIGAEVLPPILAALRDAHPELVVELVLSNQPDDLLRREADIAIRMFRPVQGAL
IARHVGGIEIGLHAHSRYLQAHGVPGSTSELSRHALIGFDQENDFIRRLQSKFKPFWRDSLAFRSDSDLAQLGAIRAGFG
IGVCQAALAARDPQLVRVLPEQFSVTLDTWVAMHEDLRDNTRCAVTFAALVNGLDAYIKGVPGRGA
>Mature_306_residues
MHTMTRNEPSWEWYRTFLQVLEVGSLSAAGRALGITQPTVGRHIDSLESALGLKLFTRSFDGFAPTEAAHELKPYAASIA
ATAAALRRVASSHGAGVRGTVRLTASEVIGAEVLPPILAALRDAHPELVVELVLSNQPDDLLRREADIAIRMFRPVQGAL
IARHVGGIEIGLHAHSRYLQAHGVPGSTSELSRHALIGFDQENDFIRRLQSKFKPFWRDSLAFRSDSDLAQLGAIRAGFG
IGVCQAALAARDPQLVRVLPEQFSVTLDTWVAMHEDLRDNTRCAVTFAALVNGLDAYIKGVPGRGA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=185, Percent_Identity=28.1081081081081, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789440, Length=180, Percent_Identity=29.4444444444444, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789639, Length=191, Percent_Identity=25.6544502617801, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI145693193, Length=183, Percent_Identity=25.6830601092896, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790208, Length=139, Percent_Identity=30.2158273381295, Blast_Score=62, Evalue=7e-11,
Organism=Escherichia coli, GI1787589, Length=188, Percent_Identity=26.063829787234, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33182; Mature: 33182

Theoretical pI: Translated: 7.82; Mature: 7.82

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHTMTRNEPSWEWYRTFLQVLEVGSLSAAGRALGITQPTVGRHIDSLESALGLKLFTRSF
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
DGFAPTEAAHELKPYAASIAATAAALRRVASSHGAGVRGTVRLTASEVIGAEVLPPILAA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHCHHHHHHHHHH
LRDAHPELVVELVLSNQPDDLLRREADIAIRMFRPVQGALIARHVGGIEIGLHAHSRYLQ
HHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEEHHHHHHHH
AHGVPGSTSELSRHALIGFDQENDFIRRLQSKFKPFWRDSLAFRSDSDLAQLGAIRAGFG
HCCCCCCHHHHHHHHEEECCCCHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHCCH
IGVCQAALAARDPQLVRVLPEQFSVTLDTWVAMHEDLRDNTRCAVTFAALVNGLDAYIKG
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
VPGRGA
CCCCCC
>Mature Secondary Structure
MHTMTRNEPSWEWYRTFLQVLEVGSLSAAGRALGITQPTVGRHIDSLESALGLKLFTRSF
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
DGFAPTEAAHELKPYAASIAATAAALRRVASSHGAGVRGTVRLTASEVIGAEVLPPILAA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHCHHHHHHHHHH
LRDAHPELVVELVLSNQPDDLLRREADIAIRMFRPVQGALIARHVGGIEIGLHAHSRYLQ
HHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEEHHHHHHHH
AHGVPGSTSELSRHALIGFDQENDFIRRLQSKFKPFWRDSLAFRSDSDLAQLGAIRAGFG
HCCCCCCHHHHHHHHEEECCCCHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHCCH
IGVCQAALAARDPQLVRVLPEQFSVTLDTWVAMHEDLRDNTRCAVTFAALVNGLDAYIKG
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
VPGRGA
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]