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The map label for this gene is ybiH [H]

Identifier: 94314512

GI number: 94314512

Start: 2347707

End: 2348408

Strand: Direct

Name: ybiH [H]

Synonym: Rmet_5593

Alternate gene names: 94314512

Gene position: 2347707-2348408 (Clockwise)

Preceding gene: 94314506

Following gene: 94314513

Centisome position: 90.99

GC content: 64.53

Gene sequence:

>702_bases
ATGGCGCGACACAGGCCTGCGGCCGAAGGCGGTTACCAGCGTGGCGAAGAGACTCGTGCCCGTATCATCGATGCGGCGCT
GCGGCTGTTCGGCACACATGGCTTTGACGGCGCTTCCACCCGCGACATCGCGCGCGAAGCCGGGGTGAACGCCCCGGCAC
TCCAGTACTACTTCGATAACAAGGAAGGGGTCTACCTGGCATGCATCGACTACTTCGTCGAGCGGGTGTGGTCGCTGCTG
GAGGAAGTTGTGGGCCGGGCGGAAGCCGTGGTGGCCCGGGAAGACGCCAGTGACGCAGAACTGATCGACGCCTACCTGGC
GCTGCAGGCGCGCTTCATGGCCTTTCTATATGAGGGCCCCGACACCGAGCACTGGCGTCAGTTCATGGCGCGTGAACGTG
CGGGACTCGGCCCCCCGGCGGCATTCGACCGCTTCGATGCCGGCATCAACCACCGGCTGTTCTCGCTGACCACGCATATC
GTTGGGCGCCTGACCGGGCAGCCGGCCACGGCGGAATCCACACGTATCCGCACCATCGCCATCGACAGCCAGGTGGCATC
GTTCAAGGTGATGCGGCGTCATATTCTCAAGGCGCTGAACTGGCAGGGCTATGGTGAAGCCGAGACGCAACGCGTGCAGG
ATGTGATGCACGACCAGACACGGACCCTGCTCGAGGGCTTGGTCGCCCAACGCGACAGGTGA

Upstream 100 bases:

>100_bases
CGGGGACTTCGAAGTCGGAATGGCTCAGCAATTATTCCACTTGATAAAAATCTGTCAACTGGTATATTTCTGTCTGAATT
CAGCGACAAGGACTTCCGAC

Downstream 100 bases:

>100_bases
GTTGGCATAACTAGAGCAAATGCTCTAATCATGTCGCGCCGGGCGATAGTTGGACGCAACTATCTCTTTTAAATTAGGCG
CTTAGACGTCATCACCAGCT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 232

Protein sequence:

>233_residues
MARHRPAAEGGYQRGEETRARIIDAALRLFGTHGFDGASTRDIAREAGVNAPALQYYFDNKEGVYLACIDYFVERVWSLL
EEVVGRAEAVVAREDASDAELIDAYLALQARFMAFLYEGPDTEHWRQFMARERAGLGPPAAFDRFDAGINHRLFSLTTHI
VGRLTGQPATAESTRIRTIAIDSQVASFKVMRRHILKALNWQGYGEAETQRVQDVMHDQTRTLLEGLVAQRDR

Sequences:

>Translated_233_residues
MARHRPAAEGGYQRGEETRARIIDAALRLFGTHGFDGASTRDIAREAGVNAPALQYYFDNKEGVYLACIDYFVERVWSLL
EEVVGRAEAVVAREDASDAELIDAYLALQARFMAFLYEGPDTEHWRQFMARERAGLGPPAAFDRFDAGINHRLFSLTTHI
VGRLTGQPATAESTRIRTIAIDSQVASFKVMRRHILKALNWQGYGEAETQRVQDVMHDQTRTLLEGLVAQRDR
>Mature_232_residues
ARHRPAAEGGYQRGEETRARIIDAALRLFGTHGFDGASTRDIAREAGVNAPALQYYFDNKEGVYLACIDYFVERVWSLLE
EVVGRAEAVVAREDASDAELIDAYLALQARFMAFLYEGPDTEHWRQFMARERAGLGPPAAFDRFDAGINHRLFSLTTHIV
GRLTGQPATAESTRIRTIAIDSQVASFKVMRRHILKALNWQGYGEAETQRVQDVMHDQTRTLLEGLVAQRDR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081783, Length=214, Percent_Identity=28.5046728971963, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647
- InterPro:   IPR015292 [H]

Pfam domain/function: PF09209 DUF1956; PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 26244; Mature: 26113

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARHRPAAEGGYQRGEETRARIIDAALRLFGTHGFDGASTRDIAREAGVNAPALQYYFDN
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCEEEEEECC
KEGVYLACIDYFVERVWSLLEEVVGRAEAVVAREDASDAELIDAYLALQARFMAFLYEGP
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
DTEHWRQFMARERAGLGPPAAFDRFDAGINHRLFSLTTHIVGRLTGQPATAESTRIRTIA
CHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
IDSQVASFKVMRRHILKALNWQGYGEAETQRVQDVMHDQTRTLLEGLVAQRDR
ECHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ARHRPAAEGGYQRGEETRARIIDAALRLFGTHGFDGASTRDIAREAGVNAPALQYYFDN
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCEEEEEECC
KEGVYLACIDYFVERVWSLLEEVVGRAEAVVAREDASDAELIDAYLALQARFMAFLYEGP
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
DTEHWRQFMARERAGLGPPAAFDRFDAGINHRLFSLTTHIVGRLTGQPATAESTRIRTIA
CHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
IDSQVASFKVMRRHILKALNWQGYGEAETQRVQDVMHDQTRTLLEGLVAQRDR
ECHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8037924; 8905232; 9278503 [H]