Click here to switch to the map view.

The map label for this gene is 94314498

Identifier: 94314498

GI number: 94314498

Start: 2332138

End: 2332692

Strand: Direct

Name: 94314498

Synonym: Rmet_5579

Alternate gene names: NA

Gene position: 2332138-2332692 (Clockwise)

Preceding gene: 94314497

Following gene: 94314499

Centisome position: 90.39

GC content: 67.75

Gene sequence:

>555_bases
ATGTCGGCGCCCGCGGACCGGACGAACGCCCCCGACACGATTCGCGTCTGGGACGTGGTCGTGCGTTTCACGCACTGGAG
CGTAGCGGCCATCGTCTGCTTTGACCTCGTCCAGGACTCCGGAGACAAGGTGCACCGAACCCTCGGCTACATCGCCGCGG
GGCTGGTGCTGTTCCGGGTCTTGTGGGGCTTCATCGGCAGCCAGCCTGCGCGTTTCCGCACGTGGCTGCCACGTCCGTCC
GCCGTGCTGGCCTATGCCAAGGCACTGATCGCCGGCCGCGCGCCGCGCCATGTCAGCCATACGCCGCTGGGCGCCGTCGC
CATGCTGGCCATGTGGACGCTGATCCTGGCGCTGGCCGTCACCGGCTGGATCTCGCGTCTCGATGCGTTCTGGGGCGAGG
ATTTGCCAGTCGACATCCACCGCTGGCTGGCGAACGCGCTGCTGGCGCTGGTGATCCTTCATGTGGCCGCAGCCATCGTC
ATGAGCATCAAGGGCCGCGAGAACCTCGTCGCTGCCATGATCACGGGCCGCAAGCCACGTGATCCGCGCCGCTAG

Upstream 100 bases:

>100_bases
GCTACGAGATCTACGGTACGACCAAGGATGGCAAGAAGGCCGAGATCTACTTCGACACCAAGACGCTTGAAATCGTCAAA
TCGGAAATCGGCAGCTAAGC

Downstream 100 bases:

>100_bases
CGGATTTCTATGGCATAGTTGCCATCGTTTTACCCCGCGTGTATCGGGAGAGTCTGTGCCAGCCGCCCGGCCGACACGGC
GCCGAAGGAGCAACCGCCCC

Product: Cytochrome b561 family protein

Products: NA

Alternate protein names: Cytochrome; Nickel-Dependent Hydrogenase Cytochrome B-Type Subunit; B-Type Cytochrome; Cytochrome B/B6 Domain; Nickel-Dependent Hydrogenase Cytochrome B Subunit; Cytochrome B Oxidoreductase Protein; Integral Membrane Protein; Hydrogenase Cytochrome B-Type Subunit; Cytochrome C Family Protein; Ni/Fe-Hydrogenase 1 B-Type Cytochrome Subunit

Number of amino acids: Translated: 184; Mature: 183

Protein sequence:

>184_residues
MSAPADRTNAPDTIRVWDVVVRFTHWSVAAIVCFDLVQDSGDKVHRTLGYIAAGLVLFRVLWGFIGSQPARFRTWLPRPS
AVLAYAKALIAGRAPRHVSHTPLGAVAMLAMWTLILALAVTGWISRLDAFWGEDLPVDIHRWLANALLALVILHVAAAIV
MSIKGRENLVAAMITGRKPRDPRR

Sequences:

>Translated_184_residues
MSAPADRTNAPDTIRVWDVVVRFTHWSVAAIVCFDLVQDSGDKVHRTLGYIAAGLVLFRVLWGFIGSQPARFRTWLPRPS
AVLAYAKALIAGRAPRHVSHTPLGAVAMLAMWTLILALAVTGWISRLDAFWGEDLPVDIHRWLANALLALVILHVAAAIV
MSIKGRENLVAAMITGRKPRDPRR
>Mature_183_residues
SAPADRTNAPDTIRVWDVVVRFTHWSVAAIVCFDLVQDSGDKVHRTLGYIAAGLVLFRVLWGFIGSQPARFRTWLPRPSA
VLAYAKALIAGRAPRHVSHTPLGAVAMLAMWTLILALAVTGWISRLDAFWGEDLPVDIHRWLANALLALVILHVAAAIVM
SIKGRENLVAAMITGRKPRDPRR

Specific function: Unknown

COG id: COG3658

COG function: function code C; Cytochrome b

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20288; Mature: 20157

Theoretical pI: Translated: 11.54; Mature: 11.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAPADRTNAPDTIRVWDVVVRFTHWSVAAIVCFDLVQDSGDKVHRTLGYIAAGLVLFRV
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
LWGFIGSQPARFRTWLPRPSAVLAYAKALIAGRAPRHVSHTPLGAVAMLAMWTLILALAV
HHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
TGWISRLDAFWGEDLPVDIHRWLANALLALVILHVAAAIVMSIKGRENLVAAMITGRKPR
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCC
DPRR
CCCC
>Mature Secondary Structure 
SAPADRTNAPDTIRVWDVVVRFTHWSVAAIVCFDLVQDSGDKVHRTLGYIAAGLVLFRV
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
LWGFIGSQPARFRTWLPRPSAVLAYAKALIAGRAPRHVSHTPLGAVAMLAMWTLILALAV
HHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
TGWISRLDAFWGEDLPVDIHRWLANALLALVILHVAAAIVMSIKGRENLVAAMITGRKPR
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCC
DPRR
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA