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The map label for this gene is ydfF [H]

Identifier: 94314488

GI number: 94314488

Start: 2323221

End: 2323928

Strand: Direct

Name: ydfF [H]

Synonym: Rmet_5569

Alternate gene names: 94314488

Gene position: 2323221-2323928 (Clockwise)

Preceding gene: 94314484

Following gene: 94314489

Centisome position: 90.04

GC content: 67.94

Gene sequence:

>708_bases
ATGGAATTCGCTCCTGGCATCAGCCAGCTTGCGGGGTTGCTGGCCGACCCGGGCCGCGCCGCGATGCTGTGGGCGCTGAT
GGACGGCAGCGCCCGGCCCGCCGGCGAACTGGCGTTGATCGCCGGATTGTCCGCGTCGTCGACCAGTGGACACCTGACCC
GCCTCTCCGAAGGCGGCTTGCTGGTGGTGGAAACTCGCGGGCGCAATCGCTACTATCGGCTTGCCACGCCGGAAATTGGC
GTGGCTATCGAGGCGCTGGCCACCGCGTCACTGGCCAGCCAGCCGCCGCGCATGCGTGCCGTGCCTGTTTCGCGCACCAC
GCCGCCTGCGCTGAAGCAGGCACGAACTTGCTACGACCACCTGGCCGGGGAACTTGCTGTGGGGCTTTTCGAACGAATGT
CGCAGGCGGGCTGGATCGCCGTGGACGGCACGCGGGTCGACTTGACCGGAGATGGCACGCAGGCCATGGGGCAGTTGGGC
ATCGACGTGGATGCGGCGCGGCGCAAGCGGCGGCAGTTCGCCTGCACATGCCCCGACTGGAGCGAGCGCAAGCCGCATCT
GGGCGGGGCGCTCGGGGCCGCGCTGCTGCAGGCGATGCTGGCGCACGGCTGGATAGAACCTACAAGCACGTCGCGCGCGT
TGCGCGTGACACCACGTGGGCAAAATGAAATCGGAAAGGTAGCGGCAGGAGAGAACAGATGGCGATAG

Upstream 100 bases:

>100_bases
GCAAGCGCTTTAATGTTTTGCAAGATCTTTAATGTGCAAGGTCACAGGCCCTCCCCCGACTCCCCTATACTGCATCCGTC
CCTTCACGGAAGCATGAACT

Downstream 100 bases:

>100_bases
AACTGGAAGACGATGCGCAGGACGCCGTAAGCCGGCTGTTCGCGCTGATCAACCTGGGTGACACGCAACAGACCACACGG
CAGCTCACGCTCCTCGAGGA

Product: ArsR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MEFAPGISQLAGLLADPGRAAMLWALMDGSARPAGELALIAGLSASSTSGHLTRLSEGGLLVVETRGRNRYYRLATPEIG
VAIEALATASLASQPPRMRAVPVSRTTPPALKQARTCYDHLAGELAVGLFERMSQAGWIAVDGTRVDLTGDGTQAMGQLG
IDVDAARRKRRQFACTCPDWSERKPHLGGALGAALLQAMLAHGWIEPTSTSRALRVTPRGQNEIGKVAAGENRWR

Sequences:

>Translated_235_residues
MEFAPGISQLAGLLADPGRAAMLWALMDGSARPAGELALIAGLSASSTSGHLTRLSEGGLLVVETRGRNRYYRLATPEIG
VAIEALATASLASQPPRMRAVPVSRTTPPALKQARTCYDHLAGELAVGLFERMSQAGWIAVDGTRVDLTGDGTQAMGQLG
IDVDAARRKRRQFACTCPDWSERKPHLGGALGAALLQAMLAHGWIEPTSTSRALRVTPRGQNEIGKVAAGENRWR
>Mature_235_residues
MEFAPGISQLAGLLADPGRAAMLWALMDGSARPAGELALIAGLSASSTSGHLTRLSEGGLLVVETRGRNRYYRLATPEIG
VAIEALATASLASQPPRMRAVPVSRTTPPALKQARTCYDHLAGELAVGLFERMSQAGWIAVDGTRVDLTGDGTQAMGQLG
IDVDAARRKRRQFACTCPDWSERKPHLGGALGAALLQAMLAHGWIEPTSTSRALRVTPRGQNEIGKVAAGENRWR

Specific function: Unknown

COG id: COG0640

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH arsR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 24934; Mature: 24934

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: PS50987 HTH_ARSR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFAPGISQLAGLLADPGRAAMLWALMDGSARPAGELALIAGLSASSTSGHLTRLSEGGL
CCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCEEEECCCCE
LVVETRGRNRYYRLATPEIGVAIEALATASLASQPPRMRAVPVSRTTPPALKQARTCYDH
EEEEECCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHH
LAGELAVGLFERMSQAGWIAVDGTRVDLTGDGTQAMGQLGIDVDAARRKRRQFACTCPDW
HHHHHHHHHHHHHHHCCEEEECCEEEEECCCCHHHHHHCCCCHHHHHHHHHCEEECCCCC
SERKPHLGGALGAALLQAMLAHGWIEPTSTSRALRVTPRGQNEIGKVAAGENRWR
CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MEFAPGISQLAGLLADPGRAAMLWALMDGSARPAGELALIAGLSASSTSGHLTRLSEGGL
CCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCEEEECCCCE
LVVETRGRNRYYRLATPEIGVAIEALATASLASQPPRMRAVPVSRTTPPALKQARTCYDH
EEEEECCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHH
LAGELAVGLFERMSQAGWIAVDGTRVDLTGDGTQAMGQLGIDVDAARRKRRQFACTCPDW
HHHHHHHHHHHHHHHCCEEEECCEEEEECCCCHHHHHHCCCCHHHHHHHHHCEEECCCCC
SERKPHLGGALGAALLQAMLAHGWIEPTSTSRALRVTPRGQNEIGKVAAGENRWR
CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]