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The map label for this gene is yfdE [H]

Identifier: 94314471

GI number: 94314471

Start: 2299274

End: 2300563

Strand: Direct

Name: yfdE [H]

Synonym: Rmet_5552

Alternate gene names: 94314471

Gene position: 2299274-2300563 (Clockwise)

Preceding gene: 94314470

Following gene: 94314472

Centisome position: 89.12

GC content: 60.0

Gene sequence:

>1290_bases
ATGCTGAATAATATCGAAGCGGATTTTCCGCCGCACGTTCCGCGCCCTGCCGATGCACCGACTGCTCTCGACGGCCTGCG
CGTCGTAGATTTCACTCACTTCATTGCCGGCCCGTTCGCAACAATGATGCTGGCCGACATGGGCGCCGACGTCATCAAGA
TTGAAGCGCCGGGGCGTGGCGACGACTTCCGCCAGTATCCGCCAGTTCACTCGGACCTCGGACAAGGTGCGCCGTTTCTC
TGGTCCAATCGCAATAAGCGAAGCATTGCCATCGACCTGAAGACGCCGGAAGGTCTCGATGTCGCGCGAGAACTCATCGC
CAGTGCTGACGTAGTCGTCGAAAATTTCTCCACCGGCGTGATGGAAAGGTTTGGCCTCGACTACGCAACCTGCAAAGCCG
ACAACCCACGTCTGGTCTATTGCTCGGTATCTGCGTATGGTCGCACCGGTGCCTTCGCTGACCGCCTTGGATTCGATCCA
ATCGCCCAGGCAGAAAGCGGCTTCGTTTCGATGAACGGATATTCCGACCGCGAAGGCGTCCGCGCGCTGTCGCCGGTGAT
GGACATCAGTACGGCCATGATGGCCTGCAATGCCATTTTGGGAGCTCTGCTGGCTCGTGAGAAGTCAGGTAAGGGCCAGG
CTGTCGAAATTGCACTCTTCGACAACGCGGTTCTGATGACTGGCTACGCTCCGATGCAGTACCTGTTCAGCGGCGCCGAC
CCTCAACGCCACGGCAACACGAGCCCGGACACCTGCCCGTCTGGCGTTTTCAAGGCAAAGGACAAGTCCTTCTATATCAA
CTCCGGCAACAACGGCATCTTCCAGCGCCTGATGACGCAAGTTATCGGCCGTCCGGAGCTAGCTGCCGATCCAAACTATG
CGACGGGCGATTTGCGCCGAGCCCGTCGCGACGAGCTCTTCGAGATTCTCGGCAATGCGTTCGCAGAACACCCCTGGAGC
CACTGGCAAGGGCTGATGCGTGCGGCAGGCATCCCCAGCGGAGAACTGCGTAGTGTCGGCGATGCCATTCGCTCGCCCGA
GGCACGAGAAAGCCGGATTGTCAGCCGAATCCCCCACCCCAAGGTCGGTTGGGTTCCGAACATCGCCTCCCCGATTCGCT
ACAGCGATACGCCTATGGTCGATCCAACGCCGGCGCCCGCGGTCGGCGAACACACACTGGAAGTACTCCGGGATGTGCTC
GGCTATGACGATGATAAGGTCGAAGGTCTGCGACGTGCCGGAGGCCTGGGCAAAGGCCAGCGCGAACTATCCAAGGAATC
CGCATCGTGA

Upstream 100 bases:

>100_bases
GCAGCGCAGAAGACCTGGAAAAGCTCATCCGCGACGAGATCGGGCAATGGAACCCGGTTATCACGAAGTTCAACATCCGC
CTCTAAAGCCCAATCTAGCC

Downstream 100 bases:

>100_bases
CGCGAACGCTCAAGGGACAAGTTGCGGTGATCGGCATTGGCGAGAGTCAGTACTATCGCCACGGCAAATCGCCCGACAGT
GAATTCAAGCTTGCACTGCA

Product: putative Formyl-coenzyme A transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 429; Mature: 429

Protein sequence:

>429_residues
MLNNIEADFPPHVPRPADAPTALDGLRVVDFTHFIAGPFATMMLADMGADVIKIEAPGRGDDFRQYPPVHSDLGQGAPFL
WSNRNKRSIAIDLKTPEGLDVARELIASADVVVENFSTGVMERFGLDYATCKADNPRLVYCSVSAYGRTGAFADRLGFDP
IAQAESGFVSMNGYSDREGVRALSPVMDISTAMMACNAILGALLAREKSGKGQAVEIALFDNAVLMTGYAPMQYLFSGAD
PQRHGNTSPDTCPSGVFKAKDKSFYINSGNNGIFQRLMTQVIGRPELAADPNYATGDLRRARRDELFEILGNAFAEHPWS
HWQGLMRAAGIPSGELRSVGDAIRSPEARESRIVSRIPHPKVGWVPNIASPIRYSDTPMVDPTPAPAVGEHTLEVLRDVL
GYDDDKVEGLRRAGGLGKGQRELSKESAS

Sequences:

>Translated_429_residues
MLNNIEADFPPHVPRPADAPTALDGLRVVDFTHFIAGPFATMMLADMGADVIKIEAPGRGDDFRQYPPVHSDLGQGAPFL
WSNRNKRSIAIDLKTPEGLDVARELIASADVVVENFSTGVMERFGLDYATCKADNPRLVYCSVSAYGRTGAFADRLGFDP
IAQAESGFVSMNGYSDREGVRALSPVMDISTAMMACNAILGALLAREKSGKGQAVEIALFDNAVLMTGYAPMQYLFSGAD
PQRHGNTSPDTCPSGVFKAKDKSFYINSGNNGIFQRLMTQVIGRPELAADPNYATGDLRRARRDELFEILGNAFAEHPWS
HWQGLMRAAGIPSGELRSVGDAIRSPEARESRIVSRIPHPKVGWVPNIASPIRYSDTPMVDPTPAPAVGEHTLEVLRDVL
GYDDDKVEGLRRAGGLGKGQRELSKESAS
>Mature_429_residues
MLNNIEADFPPHVPRPADAPTALDGLRVVDFTHFIAGPFATMMLADMGADVIKIEAPGRGDDFRQYPPVHSDLGQGAPFL
WSNRNKRSIAIDLKTPEGLDVARELIASADVVVENFSTGVMERFGLDYATCKADNPRLVYCSVSAYGRTGAFADRLGFDP
IAQAESGFVSMNGYSDREGVRALSPVMDISTAMMACNAILGALLAREKSGKGQAVEIALFDNAVLMTGYAPMQYLFSGAD
PQRHGNTSPDTCPSGVFKAKDKSFYINSGNNGIFQRLMTQVIGRPELAADPNYATGDLRRARRDELFEILGNAFAEHPWS
HWQGLMRAAGIPSGELRSVGDAIRSPEARESRIVSRIPHPKVGWVPNIASPIRYSDTPMVDPTPAPAVGEHTLEVLRDVL
GYDDDKVEGLRRAGGLGKGQRELSKESAS

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=392, Percent_Identity=34.6938775510204, Blast_Score=260, Evalue=2e-69,
Organism=Homo sapiens, GI300863124, Length=418, Percent_Identity=33.0143540669856, Blast_Score=246, Evalue=3e-65,
Organism=Homo sapiens, GI300863126, Length=392, Percent_Identity=32.1428571428571, Blast_Score=218, Evalue=7e-57,
Organism=Homo sapiens, GI13376042, Length=418, Percent_Identity=29.9043062200957, Blast_Score=206, Evalue=4e-53,
Organism=Homo sapiens, GI266456254, Length=401, Percent_Identity=26.6832917705736, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI42794625, Length=401, Percent_Identity=26.6832917705736, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI266458393, Length=209, Percent_Identity=33.4928229665072, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI266458397, Length=209, Percent_Identity=33.4928229665072, Blast_Score=112, Evalue=5e-25,
Organism=Homo sapiens, GI42822893, Length=146, Percent_Identity=38.3561643835616, Blast_Score=96, Evalue=7e-20,
Organism=Homo sapiens, GI266458395, Length=146, Percent_Identity=38.3561643835616, Blast_Score=95, Evalue=1e-19,
Organism=Escherichia coli, GI87082093, Length=332, Percent_Identity=35.2409638554217, Blast_Score=212, Evalue=5e-56,
Organism=Escherichia coli, GI1788717, Length=415, Percent_Identity=30.8433734939759, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI1786222, Length=415, Percent_Identity=26.9879518072289, Blast_Score=93, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI32564160, Length=285, Percent_Identity=26.6666666666667, Blast_Score=88, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI115535051, Length=309, Percent_Identity=23.6245954692557, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24648431, Length=391, Percent_Identity=34.5268542199489, Blast_Score=231, Evalue=7e-61,
Organism=Drosophila melanogaster, GI24585488, Length=211, Percent_Identity=30.8056872037915, Blast_Score=104, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 46469; Mature: 46469

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNNIEADFPPHVPRPADAPTALDGLRVVDFTHFIAGPFATMMLADMGADVIKIEAPGRG
CCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
DDFRQYPPVHSDLGQGAPFLWSNRNKRSIAIDLKTPEGLDVARELIASADVVVENFSTGV
CCCCCCCCCHHHHCCCCCCEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
MERFGLDYATCKADNPRLVYCSVSAYGRTGAFADRLGFDPIAQAESGFVSMNGYSDREGV
HHHHCCCEEEECCCCCEEEEEECCCCCCCCCHHHHCCCCCHHHCCCCEEEECCCCCHHHH
RALSPVMDISTAMMACNAILGALLAREKSGKGQAVEIALFDNAVLMTGYAPMQYLFSGAD
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCEEEEECCHHHHHHHCCCC
PQRHGNTSPDTCPSGVFKAKDKSFYINSGNNGIFQRLMTQVIGRPELAADPNYATGDLRR
CHHCCCCCCCCCCCCCEECCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
ARRDELFEILGNAFAEHPWSHWQGLMRAAGIPSGELRSVGDAIRSPEARESRIVSRIPHP
HHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCC
KVGWVPNIASPIRYSDTPMVDPTPAPAVGEHTLEVLRDVLGYDDDKVEGLRRAGGLGKGQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCH
RELSKESAS
HHHHHHCCC
>Mature Secondary Structure
MLNNIEADFPPHVPRPADAPTALDGLRVVDFTHFIAGPFATMMLADMGADVIKIEAPGRG
CCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
DDFRQYPPVHSDLGQGAPFLWSNRNKRSIAIDLKTPEGLDVARELIASADVVVENFSTGV
CCCCCCCCCHHHHCCCCCCEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
MERFGLDYATCKADNPRLVYCSVSAYGRTGAFADRLGFDPIAQAESGFVSMNGYSDREGV
HHHHCCCEEEECCCCCEEEEEECCCCCCCCCHHHHCCCCCHHHCCCCEEEECCCCCHHHH
RALSPVMDISTAMMACNAILGALLAREKSGKGQAVEIALFDNAVLMTGYAPMQYLFSGAD
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCEEEEECCHHHHHHHCCCC
PQRHGNTSPDTCPSGVFKAKDKSFYINSGNNGIFQRLMTQVIGRPELAADPNYATGDLRR
CHHCCCCCCCCCCCCCEECCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
ARRDELFEILGNAFAEHPWSHWQGLMRAAGIPSGELRSVGDAIRSPEARESRIVSRIPHP
HHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCC
KVGWVPNIASPIRYSDTPMVDPTPAPAVGEHTLEVLRDVLGYDDDKVEGLRRAGGLGKGQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCH
RELSKESAS
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]