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The map label for this gene is yfdE [H]

Identifier: 94314454

GI number: 94314454

Start: 2281671

End: 2282792

Strand: Reverse

Name: yfdE [H]

Synonym: Rmet_5535

Alternate gene names: 94314454

Gene position: 2282792-2281671 (Counterclockwise)

Preceding gene: 291481583

Following gene: 94314453

Centisome position: 88.48

GC content: 57.31

Gene sequence:

>1122_bases
ATGGCTAGAGAGAGCGATTCGCCAACTTTGGGACCACTCGCAGGGTTGCGTGTGATTGAGATAGCGGGTATTGGCCCCGG
GCCATTCGCTTGCATGCTGCTTTCTGACCTGGGTGCAGAAGTCGTTCGAATTGATCGGAGTGATGCAAAGCTGGGAGATC
GCTTTGACATTGTTGGCAGAGGCCGGAAGACAGTACTCCTAGACCTCAAGAAGCAAACAGACGTCGAGAAAGTGCTCGAC
CTTGTTTCGGAGGCCGACGTGTTGGTCGAGGGTTTTCGGCCGGGTGTGATGGAGCGTTTGGGTCTTGGTCCTGCAGATGT
GGAAAAGCGCAATCCAAAACTCGTGTACGGTCGCATGACAGGCTGGGGGCAGGATGGGCCGCTAGCGCAAGCTGCTGGCC
ACGATATCAACTACATCGCTATCTCGGGTGCGCTCGCCGGTATTGGCGAGGCGGGACGTGCACCGGTTCCTCCGCTAAAC
CTGGTAGGCGACTACGGTGGCGGAAGCTTGTACCTTGTCGTTGGGATTCTGGCTGCTGTATTTGAAGCGCAACGCTCGGG
AAAAGGGCAGGTCGTTGATGCGGCGATCTGCGATGGAGCAGTGTCTCTCACGAGTCTGTTTCACACTCAACTTTTGCGCG
GTCACTATGTCGAGAAGAAGGCAAGCAACACGCTCGATGGTGGGGCGCCTTACTACAAGTCTTACGAGACCTCCGACCAC
CAGTACATCTCCGTTGGCCCGATTGAGCCAAAGTTCTTCGCGTTGCTCTGCGAAAAGCTCGGTGTTCCGGACGACTTGCA
GAAGTCCCAGAACAATCGAGAGAGGTGGTCAGAGCTTGAGAAATTCTTCGGTAGGACCTTCCGAACGAATACCCGCGCGC
ACTGGTGCGAGCTTTTAGAGGGGACGGATGCTTGCTTTGCTCCGGTATTGACGCTGAGTGAAGCTGAAATGCATCCACAC
CTGCAGTACAGAAAGTCATTTGTTTCGGTCGGCGGCGTACAACAGCCCGCGCCCGCACCGAGGTTCTCGCGCACGCCAGG
TTCCGTTCAGGGGCCGGCGCCCCAAGAAGCGGCGAGTTTGCCGGACCTTCTCGAAGCATGGCGGGGCGGCAACCGCTCCT
GA

Upstream 100 bases:

>100_bases
GCGAGAGTCTTCCTCTGCGCACAGCTGAGTCAAAACGCTGGCACGACGGTATTCAATCGTGCGTGGACATGACCCCTAAC
TTTCAAATACCGGAGACTTC

Downstream 100 bases:

>100_bases
GGGTATCAATGCCTCGGCTGTGGGGGAATTTCTCCAAGACAGCGAGGCCTGGAGTGAAGCAGATTCCGTTTCAGATAACC
GCTGGGCTTTTTACATGAAA

Product: alpha-methylacyl-CoA racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 372

Protein sequence:

>373_residues
MARESDSPTLGPLAGLRVIEIAGIGPGPFACMLLSDLGAEVVRIDRSDAKLGDRFDIVGRGRKTVLLDLKKQTDVEKVLD
LVSEADVLVEGFRPGVMERLGLGPADVEKRNPKLVYGRMTGWGQDGPLAQAAGHDINYIAISGALAGIGEAGRAPVPPLN
LVGDYGGGSLYLVVGILAAVFEAQRSGKGQVVDAAICDGAVSLTSLFHTQLLRGHYVEKKASNTLDGGAPYYKSYETSDH
QYISVGPIEPKFFALLCEKLGVPDDLQKSQNNRERWSELEKFFGRTFRTNTRAHWCELLEGTDACFAPVLTLSEAEMHPH
LQYRKSFVSVGGVQQPAPAPRFSRTPGSVQGPAPQEAASLPDLLEAWRGGNRS

Sequences:

>Translated_373_residues
MARESDSPTLGPLAGLRVIEIAGIGPGPFACMLLSDLGAEVVRIDRSDAKLGDRFDIVGRGRKTVLLDLKKQTDVEKVLD
LVSEADVLVEGFRPGVMERLGLGPADVEKRNPKLVYGRMTGWGQDGPLAQAAGHDINYIAISGALAGIGEAGRAPVPPLN
LVGDYGGGSLYLVVGILAAVFEAQRSGKGQVVDAAICDGAVSLTSLFHTQLLRGHYVEKKASNTLDGGAPYYKSYETSDH
QYISVGPIEPKFFALLCEKLGVPDDLQKSQNNRERWSELEKFFGRTFRTNTRAHWCELLEGTDACFAPVLTLSEAEMHPH
LQYRKSFVSVGGVQQPAPAPRFSRTPGSVQGPAPQEAASLPDLLEAWRGGNRS
>Mature_372_residues
ARESDSPTLGPLAGLRVIEIAGIGPGPFACMLLSDLGAEVVRIDRSDAKLGDRFDIVGRGRKTVLLDLKKQTDVEKVLDL
VSEADVLVEGFRPGVMERLGLGPADVEKRNPKLVYGRMTGWGQDGPLAQAAGHDINYIAISGALAGIGEAGRAPVPPLNL
VGDYGGGSLYLVVGILAAVFEAQRSGKGQVVDAAICDGAVSLTSLFHTQLLRGHYVEKKASNTLDGGAPYYKSYETSDHQ
YISVGPIEPKFFALLCEKLGVPDDLQKSQNNRERWSELEKFFGRTFRTNTRAHWCELLEGTDACFAPVLTLSEAEMHPHL
QYRKSFVSVGGVQQPAPAPRFSRTPGSVQGPAPQEAASLPDLLEAWRGGNRS

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=339, Percent_Identity=43.6578171091445, Blast_Score=299, Evalue=2e-81,
Organism=Homo sapiens, GI266456254, Length=339, Percent_Identity=43.6578171091445, Blast_Score=299, Evalue=3e-81,
Organism=Homo sapiens, GI266458393, Length=252, Percent_Identity=46.031746031746, Blast_Score=236, Evalue=2e-62,
Organism=Homo sapiens, GI266458397, Length=249, Percent_Identity=45.7831325301205, Blast_Score=233, Evalue=2e-61,
Organism=Homo sapiens, GI300863128, Length=374, Percent_Identity=29.144385026738, Blast_Score=159, Evalue=5e-39,
Organism=Homo sapiens, GI300863124, Length=400, Percent_Identity=28, Blast_Score=150, Evalue=3e-36,
Organism=Homo sapiens, GI266458395, Length=138, Percent_Identity=46.3768115942029, Blast_Score=134, Evalue=1e-31,
Organism=Homo sapiens, GI42822893, Length=138, Percent_Identity=46.3768115942029, Blast_Score=134, Evalue=2e-31,
Organism=Homo sapiens, GI300863126, Length=374, Percent_Identity=25.4010695187166, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI13376042, Length=400, Percent_Identity=25.25, Blast_Score=109, Evalue=4e-24,
Organism=Escherichia coli, GI87082093, Length=351, Percent_Identity=28.4900284900285, Blast_Score=151, Evalue=7e-38,
Organism=Escherichia coli, GI1788717, Length=362, Percent_Identity=24.0331491712707, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786222, Length=386, Percent_Identity=25.9067357512953, Blast_Score=81, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI115535051, Length=341, Percent_Identity=35.7771260997067, Blast_Score=216, Evalue=2e-56,
Organism=Caenorhabditis elegans, GI32564160, Length=336, Percent_Identity=33.9285714285714, Blast_Score=201, Evalue=4e-52,
Organism=Drosophila melanogaster, GI24585488, Length=338, Percent_Identity=42.8994082840237, Blast_Score=285, Evalue=5e-77,
Organism=Drosophila melanogaster, GI24648431, Length=338, Percent_Identity=29.2899408284024, Blast_Score=129, Evalue=4e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 40123; Mature: 39992

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARESDSPTLGPLAGLRVIEIAGIGPGPFACMLLSDLGAEVVRIDRSDAKLGDRFDIVGR
CCCCCCCCCCCHHHCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCEEEECC
GRKTVLLDLKKQTDVEKVLDLVSEADVLVEGFRPGVMERLGLGPADVEKRNPKLVYGRMT
CCEEEEEECHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCEEEEECC
GWGQDGPLAQAAGHDINYIAISGALAGIGEAGRAPVPPLNLVGDYGGGSLYLVVGILAAV
CCCCCCCCHHHCCCCCEEEEEECHHHCCCCCCCCCCCCHHEEECCCCCHHHHHHHHHHHH
FEAQRSGKGQVVDAAICDGAVSLTSLFHTQLLRGHYVEKKASNTLDGGAPYYKSYETSDH
HHHHHCCCCCEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
QYISVGPIEPKFFALLCEKLGVPDDLQKSQNNRERWSELEKFFGRTFRTNTRAHWCELLE
CEEEECCCCHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHC
GTDACFAPVLTLSEAEMHPHLQYRKSFVSVGGVQQPAPAPRFSRTPGSVQGPAPQEAASL
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC
PDLLEAWRGGNRS
HHHHHHHCCCCCC
>Mature Secondary Structure 
ARESDSPTLGPLAGLRVIEIAGIGPGPFACMLLSDLGAEVVRIDRSDAKLGDRFDIVGR
CCCCCCCCCCHHHCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCEEEECC
GRKTVLLDLKKQTDVEKVLDLVSEADVLVEGFRPGVMERLGLGPADVEKRNPKLVYGRMT
CCEEEEEECHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCEEEEECC
GWGQDGPLAQAAGHDINYIAISGALAGIGEAGRAPVPPLNLVGDYGGGSLYLVVGILAAV
CCCCCCCCHHHCCCCCEEEEEECHHHCCCCCCCCCCCCHHEEECCCCCHHHHHHHHHHHH
FEAQRSGKGQVVDAAICDGAVSLTSLFHTQLLRGHYVEKKASNTLDGGAPYYKSYETSDH
HHHHHCCCCCEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
QYISVGPIEPKFFALLCEKLGVPDDLQKSQNNRERWSELEKFFGRTFRTNTRAHWCELLE
CEEEECCCCHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHC
GTDACFAPVLTLSEAEMHPHLQYRKSFVSVGGVQQPAPAPRFSRTPGSVQGPAPQEAASL
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC
PDLLEAWRGGNRS
HHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]