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The map label for this gene is ycaC [H]

Identifier: 94314230

GI number: 94314230

Start: 2018293

End: 2018979

Strand: Direct

Name: ycaC [H]

Synonym: Rmet_5311

Alternate gene names: 94314230

Gene position: 2018293-2018979 (Clockwise)

Preceding gene: 94314226

Following gene: 94314231

Centisome position: 78.23

GC content: 63.03

Gene sequence:

>687_bases
ATGTCCAACCCCAAGCTCGAAGTCCTGACCCCGCAGAACAGCCAGCTCATCATCATCGACCATCAACCGCAGATGGCCTT
CGGCGTGCAGTCGATGGACCGCCAGGCGATGAAGAACAACGTGGTGGGTCTGGCCAAGGCGGCAAAGATCTTCAATATCC
CGACCACCATCACCACGGTGGAGAGCGAGTCGTTCTCGGGCTTCACCTACCCGGAACTGCTGGACGTTTTCCCCAACACC
AAGACGCTCGAGCGCACCTCGATGAACTCGTGGGACGACCAGAAGGTACGTGACGCGCTAAAGGCCAACGGCCGCAACAA
GGTCGTGGTGGCCGGTCTGTGGACCGAGGTGTGCAACACCACGTTCGCGCTGTGCGCAATGCTCGAAGGCAACTACGAGA
TCTACATGGTGGGTGATGCGTCGGGCGGCACCAGCAAGGAAGCGCACGACTACGCGATGCAACGCATGGTGCAGGCCGGC
GCGGTGCCCGTGACCTGGCAGCAGGTGTTGCTCGAATGGCAGCGCGACTGGGCCCACCGCGACACGTATGACGCCGTGAT
GAAGCTGGTCAAGGAACACTCGGGCGCGTACGGCATGGGCGTCGACTACGCCTACACGATGGTCCACAAGGCAGCGCAGC
GCACCGCCACGACGCACGAGTCCCTGGCGCCGGTCCCGGCCCGCTGA

Upstream 100 bases:

>100_bases
GGGTGGAGCCGATGGGCGGAACAGCCGATGCGAAGGCACGCGGCCAGCACATCCTCCGCCCACGCCCCTTCGCCAACCCC
GCTACCCAAGGAGCGACCCC

Downstream 100 bases:

>100_bases
TCCGCGCCGCAGAGGGACATCCAGGCATCCACCTACCCTTCTCTCCAGGAACAGACCATGAGCTACATCACCGCTGAGGA
CGGCACGCAGATCTTCTACA

Product: isochorismatase hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MSNPKLEVLTPQNSQLIIIDHQPQMAFGVQSMDRQAMKNNVVGLAKAAKIFNIPTTITTVESESFSGFTYPELLDVFPNT
KTLERTSMNSWDDQKVRDALKANGRNKVVVAGLWTEVCNTTFALCAMLEGNYEIYMVGDASGGTSKEAHDYAMQRMVQAG
AVPVTWQQVLLEWQRDWAHRDTYDAVMKLVKEHSGAYGMGVDYAYTMVHKAAQRTATTHESLAPVPAR

Sequences:

>Translated_228_residues
MSNPKLEVLTPQNSQLIIIDHQPQMAFGVQSMDRQAMKNNVVGLAKAAKIFNIPTTITTVESESFSGFTYPELLDVFPNT
KTLERTSMNSWDDQKVRDALKANGRNKVVVAGLWTEVCNTTFALCAMLEGNYEIYMVGDASGGTSKEAHDYAMQRMVQAG
AVPVTWQQVLLEWQRDWAHRDTYDAVMKLVKEHSGAYGMGVDYAYTMVHKAAQRTATTHESLAPVPAR
>Mature_227_residues
SNPKLEVLTPQNSQLIIIDHQPQMAFGVQSMDRQAMKNNVVGLAKAAKIFNIPTTITTVESESFSGFTYPELLDVFPNTK
TLERTSMNSWDDQKVRDALKANGRNKVVVAGLWTEVCNTTFALCAMLEGNYEIYMVGDASGGTSKEAHDYAMQRMVQAGA
VPVTWQQVLLEWQRDWAHRDTYDAVMKLVKEHSGAYGMGVDYAYTMVHKAAQRTATTHESLAPVPAR

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787124, Length=198, Percent_Identity=34.3434343434343, Blast_Score=115, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 25395; Mature: 25264

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNPKLEVLTPQNSQLIIIDHQPQMAFGVQSMDRQAMKNNVVGLAKAAKIFNIPTTITTV
CCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHEECCCEEEEE
ESESFSGFTYPELLDVFPNTKTLERTSMNSWDDQKVRDALKANGRNKVVVAGLWTEVCNT
CCCCCCCCCHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHCCCCCEEEEEEHHHHHHHH
TFALCAMLEGNYEIYMVGDASGGTSKEAHDYAMQRMVQAGAVPVTWQQVLLEWQRDWAHR
HHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
DTYDAVMKLVKEHSGAYGMGVDYAYTMVHKAAQRTATTHESLAPVPAR
CHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SNPKLEVLTPQNSQLIIIDHQPQMAFGVQSMDRQAMKNNVVGLAKAAKIFNIPTTITTV
CCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHEECCCEEEEE
ESESFSGFTYPELLDVFPNTKTLERTSMNSWDDQKVRDALKANGRNKVVVAGLWTEVCNT
CCCCCCCCCHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHCCCCCEEEEEEHHHHHHHH
TFALCAMLEGNYEIYMVGDASGGTSKEAHDYAMQRMVQAGAVPVTWQQVLLEWQRDWAHR
HHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
DTYDAVMKLVKEHSGAYGMGVDYAYTMVHKAAQRTATTHESLAPVPAR
CHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3062312; 8905232; 9278503; 9782055 [H]