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The map label for this gene is omp32 [H]

Identifier: 94314207

GI number: 94314207

Start: 1989404

End: 1990564

Strand: Direct

Name: omp32 [H]

Synonym: Rmet_5288

Alternate gene names: 94314207

Gene position: 1989404-1990564 (Clockwise)

Preceding gene: 94314206

Following gene: 94314208

Centisome position: 77.11

GC content: 61.76

Gene sequence:

>1161_bases
GTGAACAAGAGACTTTTTGCCCTGGCCGCCGCTTGCGCGTGTGGCGCGGCCAACGCGCAATCGAGCGTGACCTTGTACGG
TGTGGTCGATGTGAACGTGGAATACGTCAACCACGTCGGGGCCGTGCCGCAGGCAGGTAACGGCTACAACCCCGGTCCAC
CCCAGACGGTGTTTCGCGAGAATTCTGGCGGCTACTCCGGATCGCGTTGGGGTCTTCGCGGCGTCGAAGACCTCGGGGGC
GGCCTGAAGTCGATCTTCGTGCTGGAAAACGGCTTCAATGCCGATACCGGCACGCTGCAACAGGGTGGACGCATGTTTGG
GCGCCAGGCCTTCGTGGGCCTCGACACACGCTTCGGTGTGTTCACGTTCGGCCGACAGTACCAATCGATTTTCTCCACCA
TGGCCAACTTCGTCCCAGCGCGATATGCCACGCAGTATGAGCCGACGGGTGTGGTGGCAGGGGCCAATTTCCGCCAGGAC
AACACGGTCAAGTACTCAGGGACGTTCGGCCCCTTCACCGCGCAGGCGGACTGGTCGTTCGGGGTTGGCACGACGCTGCC
GTCCACCTACCCCACGGTGCCGACGGCGGGTGGTGCCGGTGAAGTACCGGGCCAGTTCCGCCGCGATTCGGCCTATGGTG
TCGCCTTGAGCTATCTGGCTGGGCCGGTCGGGCTGGGTATTGGCTATGACCAGTGGAATCCGACCATCGGCACGGGCAAT
GGCACATTCAAGAAGGCCGTTGTCATGGCCAGCTACGCGTTCAACGATACGGCGAAGCTGATGGGTGGTTACCGATGGGG
GCAGAACAAGGATCCGGGCGGCACGACGATCCTGCGCGATGACTTCTACTGGATTGGTGGCCAATACCGCTTCTCGTCGG
CGCTGGACTTCACGCTCGAGTATGACTATCAGAACGTGAAGAACCTGGGTGGAAACAACGGCGTGGCCAACCCCTGGCAG
ATTGCCCTGATCGCAGACTATGCTTTCTCCAAGCGAACGGACGTGTACCTGACCACGGCATACAGCAGGAACGCCGGCCT
GGCGATGGAATCGGCAGCGAGCGGCTTCGCGACCAGCCTGGCGTTGGGCAATTCCTATGCGCTGGCCAACGGACAGAAAT
CCATGTTCGGCGCGGCATTGGGGATTCGACACGTGTTCTGA

Upstream 100 bases:

>100_bases
AGGGAACCGGACTTCGATTCGGACCTGGCAACGTTCCAGGCCGGTGGCGCCCGCGCGTTACCAGCCTGGAAACCAAAACA
ATGAACGTGGAGGAGTGCTG

Downstream 100 bases:

>100_bases
GCGTTCGGCCGGAAGCGCCTTGATGCGACTTGAGGCGACTCGAGGCGACTTCCGGCTTCACTGACGTTGTCCGCATACTG
CGGGAGAGCGAACCATGGAT

Product: Outer membrane porin protein

Products: NA

Alternate protein names: OMP32 [H]

Number of amino acids: Translated: 386; Mature: 386

Protein sequence:

>386_residues
MNKRLFALAAACACGAANAQSSVTLYGVVDVNVEYVNHVGAVPQAGNGYNPGPPQTVFRENSGGYSGSRWGLRGVEDLGG
GLKSIFVLENGFNADTGTLQQGGRMFGRQAFVGLDTRFGVFTFGRQYQSIFSTMANFVPARYATQYEPTGVVAGANFRQD
NTVKYSGTFGPFTAQADWSFGVGTTLPSTYPTVPTAGGAGEVPGQFRRDSAYGVALSYLAGPVGLGIGYDQWNPTIGTGN
GTFKKAVVMASYAFNDTAKLMGGYRWGQNKDPGGTTILRDDFYWIGGQYRFSSALDFTLEYDYQNVKNLGGNNGVANPWQ
IALIADYAFSKRTDVYLTTAYSRNAGLAMESAASGFATSLALGNSYALANGQKSMFGAALGIRHVF

Sequences:

>Translated_386_residues
MNKRLFALAAACACGAANAQSSVTLYGVVDVNVEYVNHVGAVPQAGNGYNPGPPQTVFRENSGGYSGSRWGLRGVEDLGG
GLKSIFVLENGFNADTGTLQQGGRMFGRQAFVGLDTRFGVFTFGRQYQSIFSTMANFVPARYATQYEPTGVVAGANFRQD
NTVKYSGTFGPFTAQADWSFGVGTTLPSTYPTVPTAGGAGEVPGQFRRDSAYGVALSYLAGPVGLGIGYDQWNPTIGTGN
GTFKKAVVMASYAFNDTAKLMGGYRWGQNKDPGGTTILRDDFYWIGGQYRFSSALDFTLEYDYQNVKNLGGNNGVANPWQ
IALIADYAFSKRTDVYLTTAYSRNAGLAMESAASGFATSLALGNSYALANGQKSMFGAALGIRHVF
>Mature_386_residues
MNKRLFALAAACACGAANAQSSVTLYGVVDVNVEYVNHVGAVPQAGNGYNPGPPQTVFRENSGGYSGSRWGLRGVEDLGG
GLKSIFVLENGFNADTGTLQQGGRMFGRQAFVGLDTRFGVFTFGRQYQSIFSTMANFVPARYATQYEPTGVVAGANFRQD
NTVKYSGTFGPFTAQADWSFGVGTTLPSTYPTVPTAGGAGEVPGQFRRDSAYGVALSYLAGPVGLGIGYDQWNPTIGTGN
GTFKKAVVMASYAFNDTAKLMGGYRWGQNKDPGGTTILRDDFYWIGGQYRFSSALDFTLEYDYQNVKNLGGNNGVANPWQ
IALIADYAFSKRTDVYLTTAYSRNAGLAMESAASGFATSLALGNSYALANGQKSMFGAALGIRHVF

Specific function: Forms anion selective channels [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To bacterial outer membrane proteins and porins [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001702
- InterPro:   IPR002299 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 41052; Mature: 41052

Theoretical pI: Translated: 9.00; Mature: 9.00

Prosite motif: PS00572 GLYCOSYL_HYDROL_F1_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKRLFALAAACACGAANAQSSVTLYGVVDVNVEYVNHVGAVPQAGNGYNPGPPQTVFRE
CCCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCHHHHHCCCCCCCCCCCCCCCCCCEEEC
NSGGYSGSRWGLRGVEDLGGGLKSIFVLENGFNADTGTLQQGGRMFGRQAFVGLDTRFGV
CCCCCCCCCCCCCCHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHCCEEEEECCCCCCH
FTFGRQYQSIFSTMANFVPARYATQYEPTGVVAGANFRQDNTVKYSGTFGPFTAQADWSF
HHHHHHHHHHHHHHHHHHCHHHCCCCCCCEEEECCCCCCCCEEEECCCCCCEEECCCCCC
GVGTTLPSTYPTVPTAGGAGEVPGQFRRDSAYGVALSYLAGPVGLGIGYDQWNPTIGTGN
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCHHHCCCCCCCCCCEEECCC
GTFKKAVVMASYAFNDTAKLMGGYRWGQNKDPGGTTILRDDFYWIGGQYRFSSALDFTLE
CCCEEEEEEEEECCCCHHHHHCCCCCCCCCCCCCCEEEECCEEEECCEEEECCEEEEEEE
YDYQNVKNLGGNNGVANPWQIALIADYAFSKRTDVYLTTAYSRNAGLAMESAASGFATSL
ECCHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEECCCCCCCHHHHCCCCEEEE
ALGNSYALANGQKSMFGAALGIRHVF
ECCCEEEECCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MNKRLFALAAACACGAANAQSSVTLYGVVDVNVEYVNHVGAVPQAGNGYNPGPPQTVFRE
CCCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCHHHHHCCCCCCCCCCCCCCCCCCEEEC
NSGGYSGSRWGLRGVEDLGGGLKSIFVLENGFNADTGTLQQGGRMFGRQAFVGLDTRFGV
CCCCCCCCCCCCCCHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHCCEEEEECCCCCCH
FTFGRQYQSIFSTMANFVPARYATQYEPTGVVAGANFRQDNTVKYSGTFGPFTAQADWSF
HHHHHHHHHHHHHHHHHHCHHHCCCCCCCEEEECCCCCCCCEEEECCCCCCEEECCCCCC
GVGTTLPSTYPTVPTAGGAGEVPGQFRRDSAYGVALSYLAGPVGLGIGYDQWNPTIGTGN
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCHHHCCCCCCCCCCEEECCC
GTFKKAVVMASYAFNDTAKLMGGYRWGQNKDPGGTTILRDDFYWIGGQYRFSSALDFTLE
CCCEEEEEEEEECCCCHHHHHCCCCCCCCCCCCCCEEEECCEEEECCEEEECCEEEEEEE
YDYQNVKNLGGNNGVANPWQIALIADYAFSKRTDVYLTTAYSRNAGLAMESAASGFATSL
ECCHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEECCCCCCCHHHHCCCCEEEE
ALGNSYALANGQKSMFGAALGIRHVF
ECCCEEEECCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1848840 [H]