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The map label for this gene is nahR [H]

Identifier: 94314164

GI number: 94314164

Start: 1944017

End: 1944928

Strand: Reverse

Name: nahR [H]

Synonym: Rmet_5245

Alternate gene names: 94314164

Gene position: 1944928-1944017 (Counterclockwise)

Preceding gene: 94314166

Following gene: 94314163

Centisome position: 75.38

GC content: 70.18

Gene sequence:

>912_bases
ATGGATGACCTGCGCCGTATCGACCTGAACCTGCTGTTGACATTGCACGCCTTGCTGACCGAGCAGCATGTGACGCGTGC
CGCCGTGCGGCTGCACAAGAGCCAGCCGGCCGTCAGTCACGCGCTGGCCCAGTTGCGCGATATCTTCGACGACCCGCTGC
TGGTGCGTCGCGAGAACGGCCTGACGCTCACCGCGCGCGCGCGCGATTTGCTGGGCCCGCTGGACGATGCACTGGGTCAA
TTGAACGGACTGGTGGGCGAATCCACGTTCGACGCCGCCCATGCGCGCCGCTGTTTCCGGCTGGCTCTGTCCGACTATGG
CGCGCGCAGCGTGTTGCCCGCGCTGATGCGACGGCTGCGCCGCGAGGCGCCCGGCATCGACGTTGCCGTGGTCCAGGCTG
GCCGCGAGGCGATGCTCGCGCAGCTTGCCGACGGGGAGACCGATCTGGCGATCGGTGTCTTTCCACGGCTGCCCAGCGAT
ATCGAGGTGGCTACGCTGTTCGAAGACCACTACACGAGCGTGGCGGACCGGGCCACGCTGCCTCGGCGGGGGCCGCTGTC
GGTGGAGGGCTGGCTGGCGCGGCCGCATGTGCTGGTGGCGATGCGTCCCGACGCGCCCAGTGAGATCGATCTCGCCCTGG
CCGAGGCTGGCATGCAGCGGCATGTGGCCCTGGTGCTGCCTCATTGGGGCGCTGCGCTCGATCTCGTGCCCGGCACCGAC
CTGATCCTGACCGTCGCGACCCGCGCGGTTGCCGCGGCGCCAAATCGCGCGCTGCGGGCGTTCGCGCCGCCGATCGCGCT
GGCGCCAGTGCCGTTCCAGCAGGCATGGCACGCGCGGCGCAGGGCCGATCCCGCGCATCGCTGGCTGCGCCAGACAGTGT
GGGAGTGCAGCCAGCAGCCTGAGGGCACCTAG

Upstream 100 bases:

>100_bases
TCCGATTCGAATGCAATCTGAATGCAATCTGTTGCCGGGCATGTTGCACGCGCCGCCGCCGCAATGGAAATTCGCAATCC
ATACATGAGACATTCGCCGC

Downstream 100 bases:

>100_bases
CCGCGCGGTTTCGAGGTGGTGGCGGGTGATGGGGCGAGCACGCGCCGCCGGGCTGAAAGCAAGCCGACAAGCACGGTTTG
AAGCGCTCGCATAAAATAGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MDDLRRIDLNLLLTLHALLTEQHVTRAAVRLHKSQPAVSHALAQLRDIFDDPLLVRRENGLTLTARARDLLGPLDDALGQ
LNGLVGESTFDAAHARRCFRLALSDYGARSVLPALMRRLRREAPGIDVAVVQAGREAMLAQLADGETDLAIGVFPRLPSD
IEVATLFEDHYTSVADRATLPRRGPLSVEGWLARPHVLVAMRPDAPSEIDLALAEAGMQRHVALVLPHWGAALDLVPGTD
LILTVATRAVAAAPNRALRAFAPPIALAPVPFQQAWHARRRADPAHRWLRQTVWECSQQPEGT

Sequences:

>Translated_303_residues
MDDLRRIDLNLLLTLHALLTEQHVTRAAVRLHKSQPAVSHALAQLRDIFDDPLLVRRENGLTLTARARDLLGPLDDALGQ
LNGLVGESTFDAAHARRCFRLALSDYGARSVLPALMRRLRREAPGIDVAVVQAGREAMLAQLADGETDLAIGVFPRLPSD
IEVATLFEDHYTSVADRATLPRRGPLSVEGWLARPHVLVAMRPDAPSEIDLALAEAGMQRHVALVLPHWGAALDLVPGTD
LILTVATRAVAAAPNRALRAFAPPIALAPVPFQQAWHARRRADPAHRWLRQTVWECSQQPEGT
>Mature_303_residues
MDDLRRIDLNLLLTLHALLTEQHVTRAAVRLHKSQPAVSHALAQLRDIFDDPLLVRRENGLTLTARARDLLGPLDDALGQ
LNGLVGESTFDAAHARRCFRLALSDYGARSVLPALMRRLRREAPGIDVAVVQAGREAMLAQLADGETDLAIGVFPRLPSD
IEVATLFEDHYTSVADRATLPRRGPLSVEGWLARPHVLVAMRPDAPSEIDLALAEAGMQRHVALVLPHWGAALDLVPGTD
LILTVATRAVAAAPNRALRAFAPPIALAPVPFQQAWHARRRADPAHRWLRQTVWECSQQPEGT

Specific function: Regulates the expression of the naphthalene (nahA-F) and salicylate (nahG-M) metabolism genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081684, Length=300, Percent_Identity=29, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1790147, Length=298, Percent_Identity=24.1610738255034, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33207; Mature: 33207

Theoretical pI: Translated: 7.41; Mature: 7.41

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDLRRIDLNLLLTLHALLTEQHVTRAAVRLHKSQPAVSHALAQLRDIFDDPLLVRRENG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEECCC
LTLTARARDLLGPLDDALGQLNGLVGESTFDAAHARRCFRLALSDYGARSVLPALMRRLR
CEEEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
REAPGIDVAVVQAGREAMLAQLADGETDLAIGVFPRLPSDIEVATLFEDHYTSVADRATL
HHCCCCEEEEEHHCHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCC
PRRGPLSVEGWLARPHVLVAMRPDAPSEIDLALAEAGMQRHVALVLPHWGAALDLVPGTD
CCCCCCCCCCEECCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCCCEEECCCCCH
LILTVATRAVAAAPNRALRAFAPPIALAPVPFQQAWHARRRADPAHRWLRQTVWECSQQP
HHHHHHHHHHHHCCCHHHHHHCCCCEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
EGT
CCC
>Mature Secondary Structure
MDDLRRIDLNLLLTLHALLTEQHVTRAAVRLHKSQPAVSHALAQLRDIFDDPLLVRRENG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEECCC
LTLTARARDLLGPLDDALGQLNGLVGESTFDAAHARRCFRLALSDYGARSVLPALMRRLR
CEEEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
REAPGIDVAVVQAGREAMLAQLADGETDLAIGVFPRLPSDIEVATLFEDHYTSVADRATL
HHCCCCEEEEEHHCHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCC
PRRGPLSVEGWLARPHVLVAMRPDAPSEIDLALAEAGMQRHVALVLPHWGAALDLVPGTD
CCCCCCCCCCEECCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCCCEEECCCCCH
LILTVATRAVAAAPNRALRAFAPPIALAPVPFQQAWHARRRADPAHRWLRQTVWECSQQP
HHHHHHHHHHHHCCCHHHHHHCCCCEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
EGT
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2703465; 2848005 [H]