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The map label for this gene is virS [H]

Identifier: 94314148

GI number: 94314148

Start: 1925035

End: 1926054

Strand: Direct

Name: virS [H]

Synonym: Rmet_5229

Alternate gene names: 94314148

Gene position: 1925035-1926054 (Clockwise)

Preceding gene: 94314142

Following gene: 94314150

Centisome position: 74.61

GC content: 63.04

Gene sequence:

>1020_bases
ATGGATGCCCTAGTGCGAACAAGCGGACTGCGTGGCTACCCGGCGCTGATGCGCGCCATGGGTTGCGACCCCGCGCCGCT
GCTGCGGCGCTATCACGTCGACGAAGGGGCGCTCGACAGCGACGACGCCATGATTTCCCTGCGTGCTGTCGTGCATCTTC
TGGAGGCCAGCGCGGAACAGACCCGGACCGGTGACTTCGGCCTGCGCTTGTCCAACCACCAGAGCATTGACGTGCTGGGG
CCCTTGAGCATTGCGTTGCAGAATGCAACGACAATCCGCGCCGGTATGGATTTCGCGGCGCACCATATGTTTGTGCATAG
TCCGGGTCTCGTCTACACAGTCCACGAGCACAGCGAGATTGCGAAGGATGCGGCCGAGGTCTCCATCGAGATCCGGCTCT
CGCGTCAGCCGGCCCAGCGGCAAGCCATTGACCTGTGCCTGGCGGATATGCACAACTTCACCCGGCTACTCGCCGGCGAC
CGATACGCGCTTCGCGCGGTGTCCATTCCTCACACGCCGATTGCATCGCTTAGCACCTACGAGCGCTTCTTTGGCGCCAG
GGTATTGGTGGAGCAGCCAAGGGCCAGTCTGCATCTCAGCCGCAGCACGCTTGCGGCCGACCTGCTGGGCGTCGACGCCA
CGTTGCGGCGGATCGCGGAGGACTATATCTTCCGCAATTTCCGCAGCGAGCACGGCAGTGTTTCGGATCGTGTGCGGCAG
GTGCTGCGCGACACGCTGGGCACGTCGAGCCACAGCAAGGCCAGCGTGGCCGATCTGTTGGCCATGCACCCGCGCACGAT
GCAACGCCGCCTTACCGCGGAGGCAACCAGTTTCGAGGCCATAAGAAACGATGTGCGCAAGGAGTTGGCGATGCGCTATT
TGTCCGAAACCAATCTGCCTCTCGGGCAGATCACCCTGCTTCTTGGCCTTCCCGCCCAATCTGCATTGTCGCGGGCCTGC
CGTCAGTGGTATGGCGCCGCCCCTTCGGCACTGCGCAAACATAAACGCACCCCAGATTGA

Upstream 100 bases:

>100_bases
CGCAGCGTCTCCTTATGTCTGGCCTTGTCGTCCGGAAACTGTAGCGCGTGGCGCCAAGCCACTCTTGACGTCACGAGACA
ATTAATTTACGTTACGAGCC

Downstream 100 bases:

>100_bases
TGGGTAATTCGCTGCCAGGCGAAAAAAATCCCCTCGACCATGTGTGATCATGAGGGGCTTTTTAACGGTCCGCACCTGGG
GGAGAGGACGCCGACGTCGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MDALVRTSGLRGYPALMRAMGCDPAPLLRRYHVDEGALDSDDAMISLRAVVHLLEASAEQTRTGDFGLRLSNHQSIDVLG
PLSIALQNATTIRAGMDFAAHHMFVHSPGLVYTVHEHSEIAKDAAEVSIEIRLSRQPAQRQAIDLCLADMHNFTRLLAGD
RYALRAVSIPHTPIASLSTYERFFGARVLVEQPRASLHLSRSTLAADLLGVDATLRRIAEDYIFRNFRSEHGSVSDRVRQ
VLRDTLGTSSHSKASVADLLAMHPRTMQRRLTAEATSFEAIRNDVRKELAMRYLSETNLPLGQITLLLGLPAQSALSRAC
RQWYGAAPSALRKHKRTPD

Sequences:

>Translated_339_residues
MDALVRTSGLRGYPALMRAMGCDPAPLLRRYHVDEGALDSDDAMISLRAVVHLLEASAEQTRTGDFGLRLSNHQSIDVLG
PLSIALQNATTIRAGMDFAAHHMFVHSPGLVYTVHEHSEIAKDAAEVSIEIRLSRQPAQRQAIDLCLADMHNFTRLLAGD
RYALRAVSIPHTPIASLSTYERFFGARVLVEQPRASLHLSRSTLAADLLGVDATLRRIAEDYIFRNFRSEHGSVSDRVRQ
VLRDTLGTSSHSKASVADLLAMHPRTMQRRLTAEATSFEAIRNDVRKELAMRYLSETNLPLGQITLLLGLPAQSALSRAC
RQWYGAAPSALRKHKRTPD
>Mature_339_residues
MDALVRTSGLRGYPALMRAMGCDPAPLLRRYHVDEGALDSDDAMISLRAVVHLLEASAEQTRTGDFGLRLSNHQSIDVLG
PLSIALQNATTIRAGMDFAAHHMFVHSPGLVYTVHEHSEIAKDAAEVSIEIRLSRQPAQRQAIDLCLADMHNFTRLLAGD
RYALRAVSIPHTPIASLSTYERFFGARVLVEQPRASLHLSRSTLAADLLGVDATLRRIAEDYIFRNFRSEHGSVSDRVRQ
VLRDTLGTSSHSKASVADLLAMHPRTMQRRLTAEATSFEAIRNDVRKELAMRYLSETNLPLGQITLLLGLPAQSALSRAC
RQWYGAAPSALRKHKRTPD

Specific function: May have a role in the regulation of proteins necessary for virulence [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 37532; Mature: 37532

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDALVRTSGLRGYPALMRAMGCDPAPLLRRYHVDEGALDSDDAMISLRAVVHLLEASAEQ
CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
TRTGDFGLRLSNHQSIDVLGPLSIALQNATTIRAGMDFAAHHMFVHSPGLVYTVHEHSEI
CCCCCCCEEECCCCCEEEECHHHHHHHCCHHHHHCCHHHHHHHEEECCCEEEEECCHHHH
AKDAAEVSIEIRLSRQPAQRQAIDLCLADMHNFTRLLAGDRYALRAVSIPHTPIASLSTY
HHHHHHEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHH
ERFFGARVLVEQPRASLHLSRSTLAADLLGVDATLRRIAEDYIFRNFRSEHGSVSDRVRQ
HHHHCCHHHECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
VLRDTLGTSSHSKASVADLLAMHPRTMQRRLTAEATSFEAIRNDVRKELAMRYLSETNLP
HHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LGQITLLLGLPAQSALSRACRQWYGAAPSALRKHKRTPD
HHHHHHEEECCHHHHHHHHHHHHHCCCHHHHHHCCCCCC
>Mature Secondary Structure
MDALVRTSGLRGYPALMRAMGCDPAPLLRRYHVDEGALDSDDAMISLRAVVHLLEASAEQ
CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
TRTGDFGLRLSNHQSIDVLGPLSIALQNATTIRAGMDFAAHHMFVHSPGLVYTVHEHSEI
CCCCCCCEEECCCCCEEEECHHHHHHHCCHHHHHCCHHHHHHHEEECCCEEEEECCHHHH
AKDAAEVSIEIRLSRQPAQRQAIDLCLADMHNFTRLLAGDRYALRAVSIPHTPIASLSTY
HHHHHHEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHH
ERFFGARVLVEQPRASLHLSRSTLAADLLGVDATLRRIAEDYIFRNFRSEHGSVSDRVRQ
HHHHCCHHHECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
VLRDTLGTSSHSKASVADLLAMHPRTMQRRLTAEATSFEAIRNDVRKELAMRYLSETNLP
HHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LGQITLLLGLPAQSALSRACRQWYGAAPSALRKHKRTPD
HHHHHHEEECCHHHHHHHHHHHHHCCCHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8472958; 9634230; 12218036 [H]