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The map label for this gene is yhjC [H]

Identifier: 94314088

GI number: 94314088

Start: 1867716

End: 1868138

Strand: Direct

Name: yhjC [H]

Synonym: Rmet_5169

Alternate gene names: 94314088

Gene position: 1867716-1868138 (Clockwise)

Preceding gene: 94314087

Following gene: 94314089

Centisome position: 72.39

GC content: 59.57

Gene sequence:

>423_bases
ATGTCGCAGCCAGGTGTCAGTCGTGCGATTGCGCGCCGCGAAGAACAACTCGGGTTGCGGCTCTTCGACCGTACTACGCG
CTCCATTCCGATGACTGATGAGGGTCGATCGTTTTACGAGCAGGTCATACCGTTGATCGCAACCCTCGACGCCATCACTG
CGTCAGCAAGCGGAAGTGCGAAGACTATCAATGGGCGCCTTCGCGTCAACATCGACCCGTTCCTCTCTCGGCTGATGCTA
GGTTCGCGGCTTGGGGCGTTCCTGCAACGTCACCCCGACTTGCAACTCGAGTTGATTACGCGCGACGAGCTAGGCGACAT
GATCACGGATGGCTTCGATGTGGCGATACGATTCGGCGGTCATGCCCGCCGATACGCGTCAAGCTACCCTTCGGCCGCTT
GCATCACGGAGGACCTCGCCTAG

Upstream 100 bases:

>100_bases
CAATGTGTCGGGGCGTGGGGCGCGCAGAGCTTCTACCACTACGCGCTGCGTGTGGGCGTGAAGTACACTTGGTAGGCCGT
TCTCGGGCGACGCGCTCGCC

Downstream 100 bases:

>100_bases
ACTGCCGGCTTCTGCAAAGCGGCAATCTCCCGGTATGATGCCCGCCAGGCATGGATTTTCTCCACTCGAACCATGAAAAC
AAAGGTAAGGGCCACCGTAG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 139

Protein sequence:

>140_residues
MSQPGVSRAIARREEQLGLRLFDRTTRSIPMTDEGRSFYEQVIPLIATLDAITASASGSAKTINGRLRVNIDPFLSRLML
GSRLGAFLQRHPDLQLELITRDELGDMITDGFDVAIRFGGHARRYASSYPSAACITEDLA

Sequences:

>Translated_140_residues
MSQPGVSRAIARREEQLGLRLFDRTTRSIPMTDEGRSFYEQVIPLIATLDAITASASGSAKTINGRLRVNIDPFLSRLML
GSRLGAFLQRHPDLQLELITRDELGDMITDGFDVAIRFGGHARRYASSYPSAACITEDLA
>Mature_139_residues
SQPGVSRAIARREEQLGLRLFDRTTRSIPMTDEGRSFYEQVIPLIATLDAITASASGSAKTINGRLRVNIDPFLSRLMLG
SRLGAFLQRHPDLQLELITRDELGDMITDGFDVAIRFGGHARRYASSYPSAACITEDLA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=115, Percent_Identity=38.2608695652174, Blast_Score=87, Evalue=5e-19,
Organism=Escherichia coli, GI1787128, Length=118, Percent_Identity=33.0508474576271, Blast_Score=77, Evalue=4e-16,
Organism=Escherichia coli, GI1787589, Length=120, Percent_Identity=31.6666666666667, Blast_Score=71, Evalue=3e-14,
Organism=Escherichia coli, GI1789639, Length=120, Percent_Identity=28.3333333333333, Blast_Score=64, Evalue=3e-12,
Organism=Escherichia coli, GI157672245, Length=122, Percent_Identity=31.9672131147541, Blast_Score=64, Evalue=4e-12,
Organism=Escherichia coli, GI1786401, Length=115, Percent_Identity=29.5652173913043, Blast_Score=62, Evalue=1e-11,
Organism=Escherichia coli, GI1789173, Length=119, Percent_Identity=31.0924369747899, Blast_Score=59, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 15456; Mature: 15325

Theoretical pI: Translated: 7.52; Mature: 7.52

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQPGVSRAIARREEQLGLRLFDRTTRSIPMTDEGRSFYEQVIPLIATLDAITASASGSA
CCCCCHHHHHHHHHHHHCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
KTINGRLRVNIDPFLSRLMLGSRLGAFLQRHPDLQLELITRDELGDMITDGFDVAIRFGG
EEECCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHCCEEEEEEECC
HARRYASSYPSAACITEDLA
HHHHHHHCCCCHHHHCCCCC
>Mature Secondary Structure 
SQPGVSRAIARREEQLGLRLFDRTTRSIPMTDEGRSFYEQVIPLIATLDAITASASGSA
CCCCHHHHHHHHHHHHCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
KTINGRLRVNIDPFLSRLMLGSRLGAFLQRHPDLQLELITRDELGDMITDGFDVAIRFGG
EEECCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHCCEEEEEEECC
HARRYASSYPSAACITEDLA
HHHHHHHCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]