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The map label for this gene is yfdE [H]

Identifier: 94314028

GI number: 94314028

Start: 1801187

End: 1802371

Strand: Reverse

Name: yfdE [H]

Synonym: Rmet_5109

Alternate gene names: 94314028

Gene position: 1802371-1801187 (Counterclockwise)

Preceding gene: 94314029

Following gene: 94314027

Centisome position: 69.86

GC content: 64.39

Gene sequence:

>1185_bases
ATGTTGCATCGCGCATTGGAAGGCATTCGCGTGCTGGACCTGTCGCGCATCCTGGCTGGGCCGTGGTGTACGCAGAACCT
CGCCGATCTGGGCGCCGAAGTTGTCAAGGTCGAACATCCGCAGCGTGGCGATGACACGCGCGGTTGGGGCCCCCCGTATC
TGGATGCCGCGGATGGCAGCGACGCGCGCCTTTCCGCGTACTTCATCAGCTGCAATCGCGGCAAGCAGTCGGTGTGCATC
GACTATGGCCAGCCTGAAGGTGTCGCGCAATTGCTGGAGCTGGCCCGCCACGCCGACGTGCTGGTGGAGAACTACAAGGT
GGGGACGCTCAAACGCTACGGGCTCGACTATGCGTCGCTCAAGGCGATCAATCCGCGTCTGATCTATCTGTCGATCACGG
GGTTCGGTCAGGACGGCCCGATGGCCGACAAGCCCGGCTATGACTACGTGTTCCAGGGTATGGGCGGACTGATGAGCTAC
ACCGGCCAGCCGGATGGTAGCCCCGGCGCTGGGCCGTTGCGCACGGGCGTGGCAGTGGTCGATGTCAGCACGGGCATGTA
TGCGACGAGTGCCGTGCTGGCGGCGCTGTTCCAGCGTCAGCAGACCGGTGAAGGCCAGCATCTCGATATCGCACTGCTCG
ACGTGGCCGTCGCACTGAATGCGAATCAGGGCGCCAACTACCTGGTATCGGGAAAGAACCCGCAACGCACGGGCAACGCG
CATCCAAACTGCGCGCCGTATGAGGTCTTCCGATGCGCCGATGGTTATCTGATTCTGGCGATCGGCAACGACACGCAGTT
CGCACGCTTCTGTGATGTGGCGGGGCGTCCGGATCTCGCGCAAGACCCGCGCTACGTCACGAACTCAGGCCGCATCGAAC
ATCTCACCGAACTGCGCAAGGTACTGACGGCGTTGTTCCCGACGCGCTCGCGTGCCGACTGGACGTCGGCGTTCGACGCC
GCCGGTGTGCCCTGGGGCCCGATTCATACGATGGAAGAGGTCTTCGCGCATCCGCAGGTCCAGCATCGGCAATTGCGTCA
GGTGGCCACGCATCCGGTGACGGGCGAGGTGCCAATGGTGCGCAATCCGATGCTGCCGGCCAATCCGCAGCCGCTCAAGC
CACCGCCGCTGCTCGGCGAACACACGGGCGTCACAGCAGTGGCCGCCATCGCTGCCGCGCGATAG

Upstream 100 bases:

>100_bases
CTCGAGCGGTTGGTCGCAGAAGGCCGGCAGACTTTCGACGGTCCACGTTGAGTTCACGCCGCACCCCCCCTGAATCTGAA
CACGAAAATCTGGAGTCACA

Downstream 100 bases:

>100_bases
ATGCAGGCGGCCCGACTCGAATTTCGACAATTCAATCCGTACGGAGACACATGATGAATATGAAGCCAACCTTCCTGGCA
CTGGCAGCGCTGGCCTCTGT

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 394

Protein sequence:

>394_residues
MLHRALEGIRVLDLSRILAGPWCTQNLADLGAEVVKVEHPQRGDDTRGWGPPYLDAADGSDARLSAYFISCNRGKQSVCI
DYGQPEGVAQLLELARHADVLVENYKVGTLKRYGLDYASLKAINPRLIYLSITGFGQDGPMADKPGYDYVFQGMGGLMSY
TGQPDGSPGAGPLRTGVAVVDVSTGMYATSAVLAALFQRQQTGEGQHLDIALLDVAVALNANQGANYLVSGKNPQRTGNA
HPNCAPYEVFRCADGYLILAIGNDTQFARFCDVAGRPDLAQDPRYVTNSGRIEHLTELRKVLTALFPTRSRADWTSAFDA
AGVPWGPIHTMEEVFAHPQVQHRQLRQVATHPVTGEVPMVRNPMLPANPQPLKPPPLLGEHTGVTAVAAIAAAR

Sequences:

>Translated_394_residues
MLHRALEGIRVLDLSRILAGPWCTQNLADLGAEVVKVEHPQRGDDTRGWGPPYLDAADGSDARLSAYFISCNRGKQSVCI
DYGQPEGVAQLLELARHADVLVENYKVGTLKRYGLDYASLKAINPRLIYLSITGFGQDGPMADKPGYDYVFQGMGGLMSY
TGQPDGSPGAGPLRTGVAVVDVSTGMYATSAVLAALFQRQQTGEGQHLDIALLDVAVALNANQGANYLVSGKNPQRTGNA
HPNCAPYEVFRCADGYLILAIGNDTQFARFCDVAGRPDLAQDPRYVTNSGRIEHLTELRKVLTALFPTRSRADWTSAFDA
AGVPWGPIHTMEEVFAHPQVQHRQLRQVATHPVTGEVPMVRNPMLPANPQPLKPPPLLGEHTGVTAVAAIAAAR
>Mature_394_residues
MLHRALEGIRVLDLSRILAGPWCTQNLADLGAEVVKVEHPQRGDDTRGWGPPYLDAADGSDARLSAYFISCNRGKQSVCI
DYGQPEGVAQLLELARHADVLVENYKVGTLKRYGLDYASLKAINPRLIYLSITGFGQDGPMADKPGYDYVFQGMGGLMSY
TGQPDGSPGAGPLRTGVAVVDVSTGMYATSAVLAALFQRQQTGEGQHLDIALLDVAVALNANQGANYLVSGKNPQRTGNA
HPNCAPYEVFRCADGYLILAIGNDTQFARFCDVAGRPDLAQDPRYVTNSGRIEHLTELRKVLTALFPTRSRADWTSAFDA
AGVPWGPIHTMEEVFAHPQVQHRQLRQVATHPVTGEVPMVRNPMLPANPQPLKPPPLLGEHTGVTAVAAIAAAR

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=383, Percent_Identity=42.8198433420365, Blast_Score=326, Evalue=3e-89,
Organism=Homo sapiens, GI300863124, Length=409, Percent_Identity=40.0977995110024, Blast_Score=312, Evalue=4e-85,
Organism=Homo sapiens, GI13376042, Length=409, Percent_Identity=36.1858190709046, Blast_Score=270, Evalue=2e-72,
Organism=Homo sapiens, GI300863126, Length=383, Percent_Identity=37.597911227154, Blast_Score=263, Evalue=2e-70,
Organism=Homo sapiens, GI42794625, Length=387, Percent_Identity=29.4573643410853, Blast_Score=144, Evalue=1e-34,
Organism=Homo sapiens, GI266456254, Length=387, Percent_Identity=29.4573643410853, Blast_Score=144, Evalue=2e-34,
Organism=Homo sapiens, GI266458393, Length=266, Percent_Identity=31.5789473684211, Blast_Score=115, Evalue=7e-26,
Organism=Homo sapiens, GI266458397, Length=266, Percent_Identity=31.5789473684211, Blast_Score=115, Evalue=8e-26,
Organism=Homo sapiens, GI266458395, Length=152, Percent_Identity=34.8684210526316, Blast_Score=90, Evalue=4e-18,
Organism=Homo sapiens, GI42822893, Length=153, Percent_Identity=35.2941176470588, Blast_Score=89, Evalue=5e-18,
Organism=Escherichia coli, GI87082093, Length=340, Percent_Identity=36.4705882352941, Blast_Score=253, Evalue=2e-68,
Organism=Escherichia coli, GI1788717, Length=404, Percent_Identity=29.7029702970297, Blast_Score=156, Evalue=3e-39,
Organism=Escherichia coli, GI1786222, Length=350, Percent_Identity=26.2857142857143, Blast_Score=89, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI115535051, Length=352, Percent_Identity=25.2840909090909, Blast_Score=96, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI32564160, Length=370, Percent_Identity=23.5135135135135, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24648431, Length=379, Percent_Identity=45.1187335092348, Blast_Score=318, Evalue=3e-87,
Organism=Drosophila melanogaster, GI24585488, Length=353, Percent_Identity=26.3456090651558, Blast_Score=114, Evalue=8e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42474; Mature: 42474

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLHRALEGIRVLDLSRILAGPWCTQNLADLGAEVVKVEHPQRGDDTRGWGPPYLDAADGS
CCHHHHHCHHHEEHHHHHCCCCCCHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
DARLSAYFISCNRGKQSVCIDYGQPEGVAQLLELARHADVLVENYKVGTLKRYGLDYASL
CCEEEEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHH
KAINPRLIYLSITGFGQDGPMADKPGYDYVFQGMGGLMSYTGQPDGSPGAGPLRTGVAVV
EECCCEEEEEEEEECCCCCCCCCCCCCHHHHHCCCHHHHCCCCCCCCCCCCCHHCCEEEE
DVSTGMYATSAVLAALFQRQQTGEGQHLDIALLDVAVALNANQGANYLVSGKNPQRTGNA
EECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEECCCCCCEEEECCCCCCCCCC
HPNCAPYEVFRCADGYLILAIGNDTQFARFCDVAGRPDLAQDPRYVTNSGRIEHLTELRK
CCCCCHHHHEEECCCEEEEEECCCCCHHHHHHCCCCCCCCCCCCEECCCCCHHHHHHHHH
VLTALFPTRSRADWTSAFDAAGVPWGPIHTMEEVFAHPQVQHRQLRQVATHPVTGEVPMV
HHHHHCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCC
RNPMLPANPQPLKPPPLLGEHTGVTAVAAIAAAR
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MLHRALEGIRVLDLSRILAGPWCTQNLADLGAEVVKVEHPQRGDDTRGWGPPYLDAADGS
CCHHHHHCHHHEEHHHHHCCCCCCHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
DARLSAYFISCNRGKQSVCIDYGQPEGVAQLLELARHADVLVENYKVGTLKRYGLDYASL
CCEEEEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHH
KAINPRLIYLSITGFGQDGPMADKPGYDYVFQGMGGLMSYTGQPDGSPGAGPLRTGVAVV
EECCCEEEEEEEEECCCCCCCCCCCCCHHHHHCCCHHHHCCCCCCCCCCCCCHHCCEEEE
DVSTGMYATSAVLAALFQRQQTGEGQHLDIALLDVAVALNANQGANYLVSGKNPQRTGNA
EECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEECCCCCCEEEECCCCCCCCCC
HPNCAPYEVFRCADGYLILAIGNDTQFARFCDVAGRPDLAQDPRYVTNSGRIEHLTELRK
CCCCCHHHHEEECCCEEEEEECCCCCHHHHHHCCCCCCCCCCCCEECCCCCHHHHHHHHH
VLTALFPTRSRADWTSAFDAAGVPWGPIHTMEEVFAHPQVQHRQLRQVATHPVTGEVPMV
HHHHHCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCC
RNPMLPANPQPLKPPPLLGEHTGVTAVAAIAAAR
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]