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The map label for this gene is ybhD [H]

Identifier: 94314025

GI number: 94314025

Start: 1798412

End: 1799359

Strand: Direct

Name: ybhD [H]

Synonym: Rmet_5106

Alternate gene names: 94314025

Gene position: 1798412-1799359 (Clockwise)

Preceding gene: 94314024

Following gene: 94314033

Centisome position: 69.7

GC content: 67.83

Gene sequence:

>948_bases
TTGCGGTACGAACTCACCGATCTCCGCCTTTTCCAGGCCATTGCGGAGGCCCACAGCCTGGCTGGCGGCGCTAGCGCCGC
GCATATCACGGCCTCGGCGGCCAGTTACCGTCTGAAGAACCTGGAGCATGCGCTGGGCACACCGCTCTTCGTTCGCAACG
CACGTGGCATGGATCTGACGCCTGCGGGCGAGATGATGCTGGCGCATGTGCGCGAGCTGCTGCAAGGCATCGAACGGATG
CACGGAGAGGTTGGCCGATTCGCCAGCGGGCTCAAGGGACACATCCGCCTGCTGGCAAACAGCAGCTCGCTGAACGGATT
CATCATCCCGAGCGTGAGCCGGTTCCTGGCCGCGCACCCGGCGGTCAACATCGACCTGGAAGAGCGGGCCAGCCAGGCGA
TCACGGCGGCAGTGGCCGCGCATGAGGCGGATATCGGCATATTTGCCAGCGATATGACCATGGCCGCCGACACCGCCGGC
GTTCATGCGGTGCGGTACGCGGTCGATGAACTGGTGCTGGCGGTGGCCCCCGATCATCCGTTGGCACGGCAGGGGCGCAT
CCGGTTTGGCGCCGCACTCGGGTTCGACTTCGTCTGCATGAGCCGCACTAGCAGCAACTTCCTGTTTCTGCGCGATACCG
CGCAACGCGCCGGCAAGCAACCGAATGTCCGCCTGCACGCACACAGCTTCGAGGCGGTACTGGCGCTGGCGGCTGCCGGC
GTCGGCGTGGCGCTGGTGCCGCGTAGCGTGGCGGCGGCGTCGATGCTCGAGGGGCGCGTGGTCGGGGTGGCGCTCGACGA
GCCCTGGGCGGTACGGGAGCTGACGCTCGTCACGCGCGCCGACGGAAAGCTGCCCGGCTTTGCCGCGGCGTTCGTGCAGT
TCCTGCTCAACGACCCGCGCGTGGCCATCACACGCGAGACAGGCGCGGCCCCTGACGCCGCGTCCTGA

Upstream 100 bases:

>100_bases
TGATGCAGCATGGCGAGACAAATGCGTCTTGCTGCACGCCCGCGCCATCGGCATTCGCCGGTGGCGGCAAAAGCGGGTGA
CCAATTCCGGAGTCCCTCTC

Downstream 100 bases:

>100_bases
TTCCTGTTACCGCTTGCGGTTCAGGAAGGAGGCCATGTGATGCTGCGGCTCGCCCGTATCGAAGGCGCTGCCGAACTCCG
CCACACTGTTGTCGATCGAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MRYELTDLRLFQAIAEAHSLAGGASAAHITASAASYRLKNLEHALGTPLFVRNARGMDLTPAGEMMLAHVRELLQGIERM
HGEVGRFASGLKGHIRLLANSSSLNGFIIPSVSRFLAAHPAVNIDLEERASQAITAAVAAHEADIGIFASDMTMAADTAG
VHAVRYAVDELVLAVAPDHPLARQGRIRFGAALGFDFVCMSRTSSNFLFLRDTAQRAGKQPNVRLHAHSFEAVLALAAAG
VGVALVPRSVAAASMLEGRVVGVALDEPWAVRELTLVTRADGKLPGFAAAFVQFLLNDPRVAITRETGAAPDAAS

Sequences:

>Translated_315_residues
MRYELTDLRLFQAIAEAHSLAGGASAAHITASAASYRLKNLEHALGTPLFVRNARGMDLTPAGEMMLAHVRELLQGIERM
HGEVGRFASGLKGHIRLLANSSSLNGFIIPSVSRFLAAHPAVNIDLEERASQAITAAVAAHEADIGIFASDMTMAADTAG
VHAVRYAVDELVLAVAPDHPLARQGRIRFGAALGFDFVCMSRTSSNFLFLRDTAQRAGKQPNVRLHAHSFEAVLALAAAG
VGVALVPRSVAAASMLEGRVVGVALDEPWAVRELTLVTRADGKLPGFAAAFVQFLLNDPRVAITRETGAAPDAAS
>Mature_315_residues
MRYELTDLRLFQAIAEAHSLAGGASAAHITASAASYRLKNLEHALGTPLFVRNARGMDLTPAGEMMLAHVRELLQGIERM
HGEVGRFASGLKGHIRLLANSSSLNGFIIPSVSRFLAAHPAVNIDLEERASQAITAAVAAHEADIGIFASDMTMAADTAG
VHAVRYAVDELVLAVAPDHPLARQGRIRFGAALGFDFVCMSRTSSNFLFLRDTAQRAGKQPNVRLHAHSFEAVLALAAAG
VGVALVPRSVAAASMLEGRVVGVALDEPWAVRELTLVTRADGKLPGFAAAFVQFLLNDPRVAITRETGAAPDAAS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=297, Percent_Identity=23.9057239057239, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI2367136, Length=254, Percent_Identity=27.1653543307087, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI157672245, Length=291, Percent_Identity=27.4914089347079, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1790262, Length=264, Percent_Identity=26.5151515151515, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1790208, Length=287, Percent_Identity=25.7839721254355, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1787806, Length=295, Percent_Identity=26.1016949152542, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787879, Length=301, Percent_Identity=25.9136212624585, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1788887, Length=247, Percent_Identity=25.1012145748988, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788748, Length=292, Percent_Identity=23.6301369863014, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1786713, Length=274, Percent_Identity=25.9124087591241, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1786508, Length=280, Percent_Identity=22.5, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790399, Length=290, Percent_Identity=22.7586206896552, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1788297, Length=260, Percent_Identity=25.3846153846154, Blast_Score=62, Evalue=7e-11,
Organism=Escherichia coli, GI145693193, Length=266, Percent_Identity=21.8045112781955, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33301; Mature: 33301

Theoretical pI: Translated: 7.47; Mature: 7.47

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYELTDLRLFQAIAEAHSLAGGASAAHITASAASYRLKNLEHALGTPLFVRNARGMDLT
CCCCHHHHHHHHHHHHHHHHCCCCCHHEEEHHHHHHHHHHHHHHHCCCEEEECCCCCCCC
PAGEMMLAHVRELLQGIERMHGEVGRFASGLKGHIRLLANSSSLNGFIIPSVSRFLAAHP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEECCCHHHHHHHCC
AVNIDLEERASQAITAAVAAHEADIGIFASDMTMAADTAGVHAVRYAVDELVLAVAPDHP
CEECCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHEEECCCCC
LARQGRIRFGAALGFDFVCMSRTSSNFLFLRDTAQRAGKQPNVRLHAHSFEAVLALAAAG
CCCCCCEEEEECCCCEEEEEECCCCCEEEEEECHHHCCCCCCEEEEEHHHHHHHHHHHCC
VGVALVPRSVAAASMLEGRVVGVALDEPWAVRELTLVTRADGKLPGFAAAFVQFLLNDPR
CCEEEHHHHHHHHHHHCCEEEEEEECCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCC
VAITRETGAAPDAAS
EEEEECCCCCCCCCC
>Mature Secondary Structure
MRYELTDLRLFQAIAEAHSLAGGASAAHITASAASYRLKNLEHALGTPLFVRNARGMDLT
CCCCHHHHHHHHHHHHHHHHCCCCCHHEEEHHHHHHHHHHHHHHHCCCEEEECCCCCCCC
PAGEMMLAHVRELLQGIERMHGEVGRFASGLKGHIRLLANSSSLNGFIIPSVSRFLAAHP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEECCCHHHHHHHCC
AVNIDLEERASQAITAAVAAHEADIGIFASDMTMAADTAGVHAVRYAVDELVLAVAPDHP
CEECCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHEEECCCCC
LARQGRIRFGAALGFDFVCMSRTSSNFLFLRDTAQRAGKQPNVRLHAHSFEAVLALAAAG
CCCCCCEEEEECCCCEEEEEECCCCCEEEEEECHHHCCCCCCEEEEEHHHHHHHHHHHCC
VGVALVPRSVAAASMLEGRVVGVALDEPWAVRELTLVTRADGKLPGFAAAFVQFLLNDPR
CCEEEHHHHHHHHHHHCCEEEEEEECCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCC
VAITRETGAAPDAAS
EEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]