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The map label for this gene is ydiF [H]

Identifier: 94313975

GI number: 94313975

Start: 1742952

End: 1744562

Strand: Reverse

Name: ydiF [H]

Synonym: Rmet_5053

Alternate gene names: 94313975

Gene position: 1744562-1742952 (Counterclockwise)

Preceding gene: 94313976

Following gene: 94313973

Centisome position: 67.62

GC content: 66.05

Gene sequence:

>1611_bases
ATGACGAATCCTTACATCGCGCTGGAAGGCGTGTCTTTTGTCCTGCCGGACGGCAGAACACTTTTCTCCGATCTCGACGA
GCAGTTTGACCAGCAGCCCACCGGTCTGGTCGGGCGCAATGGCGCTGGCAAGACCGTGCTGGCGCGGATTCTGGCCGGGC
AGTTGCAGCCGGCCACGGGGCGTTGTGTGCGCTCTGGCAGCGTGTGCTACCTGGCCCAGCAGGTGACGCCCGCCGCGGAG
GCTTGCGTGGCCTCTCTGGCAGGCGTGCAGGATGCGCTTGACGCGCTCGCGCGTATCGAAGCCGGCAGCATCGCCACTGA
GGACTTCAATGTACTGGGTGACCGATGGGATATCGGTCAGCGGCTGCGGCAGGAACTGGAGCGCAACGGTCTCGGTCATC
TGGACGCGGCGACACCAGCCCGCGCACTGAGTGGCGGCGAAGCGATGCGCGTCGCGCTGATTGGCGCATGGTTGTCGGAG
GCTGACTTCCTGATCCTGGACGAGCCGAGCAACCACCTGGACCGGGCCGGCCGGCAGGCGTTGATCGAGCAGCTGCGACG
TTGGCCGCGCGGGCTGATCGTCGTCAGTCACGACCGGCAGTTGCTGGCGTCGATGGCGCGTATCGCCGAGCTTTCCGCGC
TGGGGCTGCGCAGCTATGGTGGCGATTACTCGTTCTATGCCAGCAGCAAGGCCCACGACCGGCGCAATGCGCTCGATCAG
CTCGAGCAGAGCAAGCGCGAACGCAAGCGCAAGGAGCAGGCCATGCGCGAGCAGACCGATCGGCAGGCCCGGCGCAAGGC
GCGCGGCGACCGGCACGGCCAGGACGGCAATCAGGCAAAGATCCTGCTCGATCGGCAGAAGGCGCGTAGCGAGACGTCAG
CGGGCAAGCTGCGCCAGCAACAGGTCGCGGCCCGGGAGCAACTCGACGAACGTGTGCGGGCGGCGGCGCGACAGGTGGAA
ATCGACGCGCCAATCGTTTTCGCTGCGACGCCAGTGGGCGCTGGCACGCAGCGTTTGGCCGAACTGGATGCCGTAGCGTT
GCCATTCGTGCCGGCCGCCACGCGCGATATCAGCCTGACGCTGACCCGGCAACAACGCGTGGGCGTCATCGGGCCGAACG
GATGTGGCAAGTCCACGCTGCTCAAGGTGCTGGCCGGCCAACTACAGCCATTGGCAGGCACATTCAAGGTTGCGGCGGCT
TGCGTCTATCTCGACCAGCGGCTGGCCGATCTGGACCCGGCGCTCACGGTGCTCGAACACATGCAGATCGCCAATCGCAT
TGCGCCAGAAGCCGACCTGCGCACGCGACTGGCGCAACTTGGTCTGGACACACGCAAGATCATGGCGCCAAGTGGCGCGC
TCAGCGGCGGAGAGCGCCTGAAGGCGGCGCTGGCCTGCGTGCTCTACGCCGATCCCGCGCCGCAACTGCTGTTGCTGGAC
GAGCCCGGCAATCACCTCGATCTTCCTTCGCTGGAATCGCTGGAAAGCATGCTGCGCGGTTACCAGGGCACCCTGATCGT
CGTGTCGCACGACGATGGGTTCATGGAAAACCTCGGCCTGACGGATCGTCTGCTGGCAACCGGCCAAGGTTGGCGTCTCG
AGCCCTGGTGA

Upstream 100 bases:

>100_bases
GTATTCGTCCCATGCGCCATTGATGCCGCCGTCTGCATGACGGCTAGTCTCCACTGGTTCCCCACGAGCAGGGGGAGGTA
CTGGCATCTCTGGAATACGC

Downstream 100 bases:

>100_bases
GGTAGGTGGCATTGGGGATGGGCGGCCATGACGCCTGCCCATCGCCTGCACCGTGAAGGCACCGTGCCTTAGCGCCGGTC
CACGTCGAGCACCGCCTGCG

Product: putative ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 536; Mature: 535

Protein sequence:

>536_residues
MTNPYIALEGVSFVLPDGRTLFSDLDEQFDQQPTGLVGRNGAGKTVLARILAGQLQPATGRCVRSGSVCYLAQQVTPAAE
ACVASLAGVQDALDALARIEAGSIATEDFNVLGDRWDIGQRLRQELERNGLGHLDAATPARALSGGEAMRVALIGAWLSE
ADFLILDEPSNHLDRAGRQALIEQLRRWPRGLIVVSHDRQLLASMARIAELSALGLRSYGGDYSFYASSKAHDRRNALDQ
LEQSKRERKRKEQAMREQTDRQARRKARGDRHGQDGNQAKILLDRQKARSETSAGKLRQQQVAAREQLDERVRAAARQVE
IDAPIVFAATPVGAGTQRLAELDAVALPFVPAATRDISLTLTRQQRVGVIGPNGCGKSTLLKVLAGQLQPLAGTFKVAAA
CVYLDQRLADLDPALTVLEHMQIANRIAPEADLRTRLAQLGLDTRKIMAPSGALSGGERLKAALACVLYADPAPQLLLLD
EPGNHLDLPSLESLESMLRGYQGTLIVVSHDDGFMENLGLTDRLLATGQGWRLEPW

Sequences:

>Translated_536_residues
MTNPYIALEGVSFVLPDGRTLFSDLDEQFDQQPTGLVGRNGAGKTVLARILAGQLQPATGRCVRSGSVCYLAQQVTPAAE
ACVASLAGVQDALDALARIEAGSIATEDFNVLGDRWDIGQRLRQELERNGLGHLDAATPARALSGGEAMRVALIGAWLSE
ADFLILDEPSNHLDRAGRQALIEQLRRWPRGLIVVSHDRQLLASMARIAELSALGLRSYGGDYSFYASSKAHDRRNALDQ
LEQSKRERKRKEQAMREQTDRQARRKARGDRHGQDGNQAKILLDRQKARSETSAGKLRQQQVAAREQLDERVRAAARQVE
IDAPIVFAATPVGAGTQRLAELDAVALPFVPAATRDISLTLTRQQRVGVIGPNGCGKSTLLKVLAGQLQPLAGTFKVAAA
CVYLDQRLADLDPALTVLEHMQIANRIAPEADLRTRLAQLGLDTRKIMAPSGALSGGERLKAALACVLYADPAPQLLLLD
EPGNHLDLPSLESLESMLRGYQGTLIVVSHDDGFMENLGLTDRLLATGQGWRLEPW
>Mature_535_residues
TNPYIALEGVSFVLPDGRTLFSDLDEQFDQQPTGLVGRNGAGKTVLARILAGQLQPATGRCVRSGSVCYLAQQVTPAAEA
CVASLAGVQDALDALARIEAGSIATEDFNVLGDRWDIGQRLRQELERNGLGHLDAATPARALSGGEAMRVALIGAWLSEA
DFLILDEPSNHLDRAGRQALIEQLRRWPRGLIVVSHDRQLLASMARIAELSALGLRSYGGDYSFYASSKAHDRRNALDQL
EQSKRERKRKEQAMREQTDRQARRKARGDRHGQDGNQAKILLDRQKARSETSAGKLRQQQVAAREQLDERVRAAARQVEI
DAPIVFAATPVGAGTQRLAELDAVALPFVPAATRDISLTLTRQQRVGVIGPNGCGKSTLLKVLAGQLQPLAGTFKVAAAC
VYLDQRLADLDPALTVLEHMQIANRIAPEADLRTRLAQLGLDTRKIMAPSGALSGGERLKAALACVLYADPAPQLLLLDE
PGNHLDLPSLESLESMLRGYQGTLIVVSHDDGFMENLGLTDRLLATGQGWRLEPW

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=506, Percent_Identity=28.0632411067194, Blast_Score=159, Evalue=4e-39,
Organism=Homo sapiens, GI10947137, Length=517, Percent_Identity=28.0464216634429, Blast_Score=140, Evalue=2e-33,
Organism=Homo sapiens, GI27881506, Length=517, Percent_Identity=28.0464216634429, Blast_Score=140, Evalue=2e-33,
Organism=Homo sapiens, GI10947135, Length=389, Percent_Identity=29.0488431876607, Blast_Score=108, Evalue=2e-23,
Organism=Homo sapiens, GI69354671, Length=389, Percent_Identity=29.0488431876607, Blast_Score=108, Evalue=2e-23,
Organism=Escherichia coli, GI1789751, Length=502, Percent_Identity=30.0796812749004, Blast_Score=167, Evalue=2e-42,
Organism=Escherichia coli, GI1787182, Length=516, Percent_Identity=30.4263565891473, Blast_Score=155, Evalue=6e-39,
Organism=Escherichia coli, GI1787041, Length=558, Percent_Identity=27.5985663082437, Blast_Score=148, Evalue=9e-37,
Organism=Escherichia coli, GI2367384, Length=538, Percent_Identity=28.996282527881, Blast_Score=141, Evalue=8e-35,
Organism=Escherichia coli, GI87081791, Length=180, Percent_Identity=33.8888888888889, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787758, Length=188, Percent_Identity=30.3191489361702, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI87081782, Length=171, Percent_Identity=32.7485380116959, Blast_Score=62, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI17555318, Length=495, Percent_Identity=27.0707070707071, Blast_Score=147, Evalue=1e-35,
Organism=Caenorhabditis elegans, GI17559834, Length=501, Percent_Identity=26.9461077844311, Blast_Score=135, Evalue=5e-32,
Organism=Caenorhabditis elegans, GI17553372, Length=531, Percent_Identity=28.4369114877589, Blast_Score=131, Evalue=1e-30,
Organism=Saccharomyces cerevisiae, GI6320874, Length=532, Percent_Identity=27.2556390977444, Blast_Score=128, Evalue=2e-30,
Organism=Saccharomyces cerevisiae, GI6321121, Length=519, Percent_Identity=25.626204238921, Blast_Score=128, Evalue=2e-30,
Organism=Saccharomyces cerevisiae, GI6324314, Length=163, Percent_Identity=34.9693251533742, Blast_Score=90, Evalue=1e-18,
Organism=Saccharomyces cerevisiae, GI6323278, Length=163, Percent_Identity=34.3558282208589, Blast_Score=86, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6325030, Length=167, Percent_Identity=33.5329341317365, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24666836, Length=509, Percent_Identity=28.4872298624754, Blast_Score=151, Evalue=9e-37,
Organism=Drosophila melanogaster, GI24642252, Length=501, Percent_Identity=26.5469061876248, Blast_Score=141, Evalue=9e-34,
Organism=Drosophila melanogaster, GI18859989, Length=501, Percent_Identity=26.5469061876248, Blast_Score=141, Evalue=9e-34,
Organism=Drosophila melanogaster, GI24641342, Length=502, Percent_Identity=28.2868525896414, Blast_Score=140, Evalue=3e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 58203; Mature: 58072

Theoretical pI: Translated: 7.53; Mature: 7.53

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNPYIALEGVSFVLPDGRTLFSDLDEQFDQQPTGLVGRNGAGKTVLARILAGQLQPATG
CCCCEEEECCCEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCC
RCVRSGSVCYLAQQVTPAAEACVASLAGVQDALDALARIEAGSIATEDFNVLGDRWDIGQ
HHCCCCCEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHH
RLRQELERNGLGHLDAATPARALSGGEAMRVALIGAWLSEADFLILDEPSNHLDRAGRQA
HHHHHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH
LIEQLRRWPRGLIVVSHDRQLLASMARIAELSALGLRSYGGDYSFYASSKAHDRRNALDQ
HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH
LEQSKRERKRKEQAMREQTDRQARRKARGDRHGQDGNQAKILLDRQKARSETSAGKLRQQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHCCHHHHHHHHHH
QVAAREQLDERVRAAARQVEIDAPIVFAATPVGAGTQRLAELDAVALPFVPAATRDISLT
HHHHHHHHHHHHHHHHHHEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCEEEE
LTRQQRVGVIGPNGCGKSTLLKVLAGQLQPLAGTFKVAAACVYLDQRLADLDPALTVLEH
EECCCCCCEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
MQIANRIAPEADLRTRLAQLGLDTRKIMAPSGALSGGERLKAALACVLYADPAPQLLLLD
HHHHHHCCCCHHHHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHHHEEECCCCCEEEEE
EPGNHLDLPSLESLESMLRGYQGTLIVVSHDDGFMENLGLTDRLLATGQGWRLEPW
CCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCHHHHCCCHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TNPYIALEGVSFVLPDGRTLFSDLDEQFDQQPTGLVGRNGAGKTVLARILAGQLQPATG
CCCEEEECCCEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCC
RCVRSGSVCYLAQQVTPAAEACVASLAGVQDALDALARIEAGSIATEDFNVLGDRWDIGQ
HHCCCCCEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHH
RLRQELERNGLGHLDAATPARALSGGEAMRVALIGAWLSEADFLILDEPSNHLDRAGRQA
HHHHHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH
LIEQLRRWPRGLIVVSHDRQLLASMARIAELSALGLRSYGGDYSFYASSKAHDRRNALDQ
HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH
LEQSKRERKRKEQAMREQTDRQARRKARGDRHGQDGNQAKILLDRQKARSETSAGKLRQQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHCCHHHHHHHHHH
QVAAREQLDERVRAAARQVEIDAPIVFAATPVGAGTQRLAELDAVALPFVPAATRDISLT
HHHHHHHHHHHHHHHHHHEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCEEEE
LTRQQRVGVIGPNGCGKSTLLKVLAGQLQPLAGTFKVAAACVYLDQRLADLDPALTVLEH
EECCCCCCEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
MQIANRIAPEADLRTRLAQLGLDTRKIMAPSGALSGGERLKAALACVLYADPAPQLLLLD
HHHHHHCCCCHHHHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHHHEEECCCCCEEEEE
EPGNHLDLPSLESLESMLRGYQGTLIVVSHDDGFMENLGLTDRLLATGQGWRLEPW
CCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCHHHHCCCHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]