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The map label for this gene is yjiR [C]

Identifier: 94313876

GI number: 94313876

Start: 1619637

End: 1621037

Strand: Reverse

Name: yjiR [C]

Synonym: Rmet_4954

Alternate gene names: 94313876

Gene position: 1621037-1619637 (Counterclockwise)

Preceding gene: 94313880

Following gene: 94313875

Centisome position: 62.83

GC content: 66.45

Gene sequence:

>1401_bases
ATGAGTGACATGAAAGGCGAACGCCATGTGGAATGGCTGCGCCCGCTGACACCGGGCGCAGGGCCGCGCTACATGCAGAT
CGCGGATTTGATTGCGCGGGCGGTGCAGACGGGCGAACTCGCCGTCGGCGACCAGATCCCGTCGCAGCGGTGGCTGGCGA
CGCAGCTCGGGGTGGATCTCACCACGGTGACGCGTGCCTATACGGAGGCACGCAATCGTGGCCTGATCTCGTCGTTCAGC
GGGCGTGGCTCGTTCGTCGCGGGCGTTGGCGAGGCGGGCGATGAGATGCGTATCGACCTGTCGATGAACACCCCACCGCA
GCCGGCCAGTGGAAGCATGGGTGACGCGCTCAAGTTGGCCATTGACGAAGTGCTGGCACGGCAAGGCATCGAGGCGATGT
CCGCCTACCAGGACACGTGGTCCGGCGCCTCGATCGTCCAGGCGGGCAGGGCGTGGCTGCGGCCCGCGGTTGGCGCGATG
GCAGGGCAGCAGGAACTGATTGTCTGCGCGGGTACCCAGGCCGCGATCTTCAGCCTTTTGCAGTCGCGCACGCAGCGTGG
GGATGCCGTCCTTGCCGAGCCGCTGACCTATCCCGGCTTTCTGCTTACCGCGCAGCAGCTCGGTTTGCGTGTCGTCGCGC
TCGAAGTCGACCAGGATGGGGTGTTGCCGGACGCGATCGAACGAAGCCATCGCGAAACCGGCGCGCAGGTGATCTACCTG
AATCCGACGCTCCAGAACCCGACTGCGAGCACCATGCCCGAGCACCGGCGCGAGGCCATCGGGGCCATGTTGCGCAAGCT
CGGCATGACGCTGATCGAGGACGATCCCTATCGCTACCTGCTCAACGACGCGCCGCCGCCGATCGTCACCTACGAAGGGG
GCGAGCGTGCGTACTATCTGACCTCGCTGTCGAAATGCCTCTGGCCGAGCCTGCGCACGTCGTTCGTCCTGTTGCCGCGC
CAGCACGATGCCGCAATGCTGCAGGATGCGTTGCGCGCCTCCAGCATGGGGTGTTCGCTATTGCTGACCGCGGTGGCCGA
GCACTGGATGCGCAGTGGCCAGGCCAGGCACCTGATGCTCGACATCCAGCGCGAAGTGCGCGCGCGGCAGACGCTGGCGC
GCAACCTGTTGCCGAAGGACGTCAACGCACATCCCACCGGCCTGCACTTGTGGATGACGCTGCCGGCCCACTGGAATCGA
CAGTTGTTCGCGCTCGCGCTCGAGCAGCAGGGCGTGCTGGTGGCCTGCTCGGATGCGTTCAGCGTGGATGCGAATCCCGT
GGATGCGGTGCGTCTGTCGGTCGGCGGCGCGCGTAGCCAGACGGATCTGGCTCATGCGTTGCAGCGGATCGCCACGTTGC
TGCGGGAGGATCGCCGTCGAGGCGTGCGGGCCATTGTCTAG

Upstream 100 bases:

>100_bases
CTCCATACAGTGATAAACTGTATGCGTTTATGTATGGACTGTATGCGTATACTATGCCTCAGGTTCCGGGTTTGCAATGG
ACGATTGAAGGAAGTCGACG

Downstream 100 bases:

>100_bases
TTGTGGTCCAGCAGCGCCGGACACCTGTCTGGCGCGTTGCTCCGGAGCCGTGGTCCGTCATCCATACGGGTCTTGGGTGT
ATGGATGGAAGCGGCGGTAT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 466; Mature: 465

Protein sequence:

>466_residues
MSDMKGERHVEWLRPLTPGAGPRYMQIADLIARAVQTGELAVGDQIPSQRWLATQLGVDLTTVTRAYTEARNRGLISSFS
GRGSFVAGVGEAGDEMRIDLSMNTPPQPASGSMGDALKLAIDEVLARQGIEAMSAYQDTWSGASIVQAGRAWLRPAVGAM
AGQQELIVCAGTQAAIFSLLQSRTQRGDAVLAEPLTYPGFLLTAQQLGLRVVALEVDQDGVLPDAIERSHRETGAQVIYL
NPTLQNPTASTMPEHRREAIGAMLRKLGMTLIEDDPYRYLLNDAPPPIVTYEGGERAYYLTSLSKCLWPSLRTSFVLLPR
QHDAAMLQDALRASSMGCSLLLTAVAEHWMRSGQARHLMLDIQREVRARQTLARNLLPKDVNAHPTGLHLWMTLPAHWNR
QLFALALEQQGVLVACSDAFSVDANPVDAVRLSVGGARSQTDLAHALQRIATLLREDRRRGVRAIV

Sequences:

>Translated_466_residues
MSDMKGERHVEWLRPLTPGAGPRYMQIADLIARAVQTGELAVGDQIPSQRWLATQLGVDLTTVTRAYTEARNRGLISSFS
GRGSFVAGVGEAGDEMRIDLSMNTPPQPASGSMGDALKLAIDEVLARQGIEAMSAYQDTWSGASIVQAGRAWLRPAVGAM
AGQQELIVCAGTQAAIFSLLQSRTQRGDAVLAEPLTYPGFLLTAQQLGLRVVALEVDQDGVLPDAIERSHRETGAQVIYL
NPTLQNPTASTMPEHRREAIGAMLRKLGMTLIEDDPYRYLLNDAPPPIVTYEGGERAYYLTSLSKCLWPSLRTSFVLLPR
QHDAAMLQDALRASSMGCSLLLTAVAEHWMRSGQARHLMLDIQREVRARQTLARNLLPKDVNAHPTGLHLWMTLPAHWNR
QLFALALEQQGVLVACSDAFSVDANPVDAVRLSVGGARSQTDLAHALQRIATLLREDRRRGVRAIV
>Mature_465_residues
SDMKGERHVEWLRPLTPGAGPRYMQIADLIARAVQTGELAVGDQIPSQRWLATQLGVDLTTVTRAYTEARNRGLISSFSG
RGSFVAGVGEAGDEMRIDLSMNTPPQPASGSMGDALKLAIDEVLARQGIEAMSAYQDTWSGASIVQAGRAWLRPAVGAMA
GQQELIVCAGTQAAIFSLLQSRTQRGDAVLAEPLTYPGFLLTAQQLGLRVVALEVDQDGVLPDAIERSHRETGAQVIYLN
PTLQNPTASTMPEHRREAIGAMLRKLGMTLIEDDPYRYLLNDAPPPIVTYEGGERAYYLTSLSKCLWPSLRTSFVLLPRQ
HDAAMLQDALRASSMGCSLLLTAVAEHWMRSGQARHLMLDIQREVRARQTLARNLLPKDVNAHPTGLHLWMTLPAHWNRQ
LFALALEQQGVLVACSDAFSVDANPVDAVRLSVGGARSQTDLAHALQRIATLLREDRRRGVRAIV

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=318, Percent_Identity=23.8993710691824, Blast_Score=84, Evalue=3e-16,
Organism=Homo sapiens, GI33469970, Length=318, Percent_Identity=23.8993710691824, Blast_Score=84, Evalue=3e-16,
Organism=Escherichia coli, GI1790797, Length=459, Percent_Identity=23.9651416122004, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1787710, Length=470, Percent_Identity=23.8297872340426, Blast_Score=91, Evalue=1e-19,
Organism=Saccharomyces cerevisiae, GI6321236, Length=121, Percent_Identity=30.5785123966942, Blast_Score=72, Evalue=3e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 50921; Mature: 50790

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDMKGERHVEWLRPLTPGAGPRYMQIADLIARAVQTGELAVGDQIPSQRWLATQLGVDL
CCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHCCCH
TTVTRAYTEARNRGLISSFSGRGSFVAGVGEAGDEMRIDLSMNTPPQPASGSMGDALKLA
HHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCHHHHHH
IDEVLARQGIEAMSAYQDTWSGASIVQAGRAWLRPAVGAMAGQQELIVCAGTQAAIFSLL
HHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
QSRTQRGDAVLAEPLTYPGFLLTAQQLGLRVVALEVDQDGVLPDAIERSHRETGAQVIYL
HHHHHCCCEEEECCCCCCCHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHCCCEEEEE
NPTLQNPTASTMPEHRREAIGAMLRKLGMTLIEDDPYRYLLNDAPPPIVTYEGGERAYYL
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEECCCCCEEEECCCCCCEEEECCCCEEEHH
TSLSKCLWPSLRTSFVLLPRQHDAAMLQDALRASSMGCSLLLTAVAEHWMRSGQARHLML
HHHHHHHCHHHCCEEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEHH
DIQREVRARQTLARNLLPKDVNAHPTGLHLWMTLPAHWNRQLFALALEQQGVLVACSDAF
HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEECCCC
SVDANPVDAVRLSVGGARSQTDLAHALQRIATLLREDRRRGVRAIV
CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SDMKGERHVEWLRPLTPGAGPRYMQIADLIARAVQTGELAVGDQIPSQRWLATQLGVDL
CCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHCCCH
TTVTRAYTEARNRGLISSFSGRGSFVAGVGEAGDEMRIDLSMNTPPQPASGSMGDALKLA
HHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCHHHHHH
IDEVLARQGIEAMSAYQDTWSGASIVQAGRAWLRPAVGAMAGQQELIVCAGTQAAIFSLL
HHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
QSRTQRGDAVLAEPLTYPGFLLTAQQLGLRVVALEVDQDGVLPDAIERSHRETGAQVIYL
HHHHHCCCEEEECCCCCCCHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHCCCEEEEE
NPTLQNPTASTMPEHRREAIGAMLRKLGMTLIEDDPYRYLLNDAPPPIVTYEGGERAYYL
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEECCCCCEEEECCCCCCEEEECCCCEEEHH
TSLSKCLWPSLRTSFVLLPRQHDAAMLQDALRASSMGCSLLLTAVAEHWMRSGQARHLML
HHHHHHHCHHHCCEEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEHH
DIQREVRARQTLARNLLPKDVNAHPTGLHLWMTLPAHWNRQLFALALEQQGVLVACSDAF
HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEECCCC
SVDANPVDAVRLSVGGARSQTDLAHALQRIATLLREDRRRGVRAIV
CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1400197 [H]