| Definition | Cupriavidus metallidurans CH34 megaplasmid, complete sequence. |
|---|---|
| Accession | NC_007974 |
| Length | 2,580,084 |
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The map label for this gene is ygfF [C]
Identifier: 94313870
GI number: 94313870
Start: 1612781
End: 1613593
Strand: Reverse
Name: ygfF [C]
Synonym: Rmet_4948
Alternate gene names: 94313870
Gene position: 1613593-1612781 (Counterclockwise)
Preceding gene: 94313871
Following gene: 94313869
Centisome position: 62.54
GC content: 66.79
Gene sequence:
>813_bases ATGGAACAGATTCCAGATCCACAACCGGCCAGCCGGTCCCTGAAGGGCCGCGTGGCGATCGTGACCGGCGCGGGGTCTCG CGCGGATGGCATCGGCAATGGCCGCGCCGCTGCCATTCTGCTGGCGCGCGATGGCGCCCGCGTGGCGCTGATCGACAGCG TGCGCGAATGGGCTGAGGTGACGCACCGGATGATCGTGGAGGAGGGCGGCGAGGCCGAGGTCATCGCCTGCGACGTGAGT CGTGATGAAGATTGCCGGAGCGCCGTGGCGCGCGCGGTGGAACTCTGGGGGCGCGTCGATATCCTGGTCAACAACGTCGG CATCGGCGGACCGCAAGGCACTGCCGAGGACGTCGATCTCGAAGCGTGGGATCAGGCGCTGCGCATCAACGTGACCTCGA TGATGCTGATGGCACGTCATGCGATTCCGCACATGCGCGCGCAAGGCAAGGGTGCGATCGTCAACGTGGCGTCGGTGGCG GGGCTGATCGGCGGGCATCCGAGTCTGCTGTATCCGACCTCGAAGGGCGCGGTGGTCAACATGACACGTGCCATGGCCGC GCATCACGGCGAACAGGGCATCCGCGTCAACTGCGTGGCGCCGGGAATGGTCTACACACCCATGGTTTATGCCAAGGGGA TGTCGCCAGAGAAGCGCGAGGCACGCCGCAATCGCTCGTTTCTGCGCACCGAGGGCAGCGGCTGGGATGTCGGGCAGGCC ATCCGGTATTTGGTCAGCGACGAGTCTGGCTGGGTGACCGGGGCGGTGTTGCCGGTGGACGCAGGCGCCACGGCGGGCCG GCATTCGTATTGA
Upstream 100 bases:
>100_bases GTTGCCACTGACCGCGCTTGGCAAGCCCGACAAGAAGCAACTGCGCGAACGCTACTGGGGCGGCATGGGCCGCGCCGTCA ACTGATAACGGAGACACGCG
Downstream 100 bases:
>100_bases GGAGAAGGGTGATGTCGAATTTGAATCTGTTGAGCCGCTGGGTGCGATGGACTGTGGGTGCGAGCCTTGCGATGGCCGGT ATGGCCAACGCGGCGGACTA
Product: putative short-chain dehydrogenase/reductase (SDR)
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 270; Mature: 270
Protein sequence:
>270_residues MEQIPDPQPASRSLKGRVAIVTGAGSRADGIGNGRAAAILLARDGARVALIDSVREWAEVTHRMIVEEGGEAEVIACDVS RDEDCRSAVARAVELWGRVDILVNNVGIGGPQGTAEDVDLEAWDQALRINVTSMMLMARHAIPHMRAQGKGAIVNVASVA GLIGGHPSLLYPTSKGAVVNMTRAMAAHHGEQGIRVNCVAPGMVYTPMVYAKGMSPEKREARRNRSFLRTEGSGWDVGQA IRYLVSDESGWVTGAVLPVDAGATAGRHSY
Sequences:
>Translated_270_residues MEQIPDPQPASRSLKGRVAIVTGAGSRADGIGNGRAAAILLARDGARVALIDSVREWAEVTHRMIVEEGGEAEVIACDVS RDEDCRSAVARAVELWGRVDILVNNVGIGGPQGTAEDVDLEAWDQALRINVTSMMLMARHAIPHMRAQGKGAIVNVASVA GLIGGHPSLLYPTSKGAVVNMTRAMAAHHGEQGIRVNCVAPGMVYTPMVYAKGMSPEKREARRNRSFLRTEGSGWDVGQA IRYLVSDESGWVTGAVLPVDAGATAGRHSY >Mature_270_residues MEQIPDPQPASRSLKGRVAIVTGAGSRADGIGNGRAAAILLARDGARVALIDSVREWAEVTHRMIVEEGGEAEVIACDVS RDEDCRSAVARAVELWGRVDILVNNVGIGGPQGTAEDVDLEAWDQALRINVTSMMLMARHAIPHMRAQGKGAIVNVASVA GLIGGHPSLLYPTSKGAVVNMTRAMAAHHGEQGIRVNCVAPGMVYTPMVYAKGMSPEKREARRNRSFLRTEGSGWDVGQA IRYLVSDESGWVTGAVLPVDAGATAGRHSY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=249, Percent_Identity=32.9317269076305, Blast_Score=122, Evalue=3e-28, Organism=Homo sapiens, GI59889578, Length=230, Percent_Identity=31.304347826087, Blast_Score=113, Evalue=1e-25, Organism=Homo sapiens, GI66933014, Length=171, Percent_Identity=37.4269005847953, Blast_Score=109, Evalue=3e-24, Organism=Homo sapiens, GI40254992, Length=246, Percent_Identity=35.3658536585366, Blast_Score=108, Evalue=6e-24, Organism=Homo sapiens, GI5031737, Length=256, Percent_Identity=31.640625, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI31542939, Length=215, Percent_Identity=34.8837209302326, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI33667109, Length=226, Percent_Identity=32.7433628318584, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI126723750, Length=255, Percent_Identity=30.9803921568627, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI7705925, Length=250, Percent_Identity=35.2, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI15277342, Length=263, Percent_Identity=29.6577946768061, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI126723191, Length=208, Percent_Identity=32.2115384615385, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI19923817, Length=273, Percent_Identity=26.007326007326, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI224922801, Length=179, Percent_Identity=34.6368715083799, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI4758504, Length=220, Percent_Identity=32.7272727272727, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI10190704, Length=255, Percent_Identity=28.2352941176471, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI302344755, Length=130, Percent_Identity=33.0769230769231, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI4504505, Length=197, Percent_Identity=29.9492385786802, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI40807363, Length=210, Percent_Identity=27.6190476190476, Blast_Score=69, Evalue=3e-12, Organism=Escherichia coli, GI2367175, Length=251, Percent_Identity=36.6533864541833, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI87082160, Length=250, Percent_Identity=32, Blast_Score=111, Evalue=4e-26, Organism=Escherichia coli, GI1787905, Length=249, Percent_Identity=32.1285140562249, Blast_Score=111, Evalue=5e-26, Organism=Escherichia coli, GI87082100, Length=258, Percent_Identity=32.1705426356589, Blast_Score=108, Evalue=3e-25, Organism=Escherichia coli, GI1789378, Length=261, Percent_Identity=32.9501915708812, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1789208, Length=259, Percent_Identity=29.3436293436293, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1788459, Length=249, Percent_Identity=30.1204819277108, Blast_Score=91, Evalue=6e-20, Organism=Escherichia coli, GI1787335, Length=250, Percent_Identity=28.4, Blast_Score=91, Evalue=9e-20, Organism=Escherichia coli, GI1790717, Length=255, Percent_Identity=30.1960784313725, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1787526, Length=207, Percent_Identity=28.5024154589372, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI1789057, Length=236, Percent_Identity=27.9661016949153, Blast_Score=66, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71994604, Length=254, Percent_Identity=33.4645669291339, Blast_Score=117, Evalue=6e-27, Organism=Caenorhabditis elegans, GI71994600, Length=259, Percent_Identity=33.2046332046332, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17559104, Length=266, Percent_Identity=31.5789473684211, Blast_Score=114, Evalue=7e-26, Organism=Caenorhabditis elegans, GI193204405, Length=210, Percent_Identity=36.1904761904762, Blast_Score=113, Evalue=8e-26, Organism=Caenorhabditis elegans, GI17562908, Length=266, Percent_Identity=32.7067669172932, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17538480, Length=267, Percent_Identity=30.7116104868914, Blast_Score=107, Evalue=7e-24, Organism=Caenorhabditis elegans, GI17531453, Length=268, Percent_Identity=31.7164179104478, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17562906, Length=266, Percent_Identity=31.5789473684211, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17551412, Length=202, Percent_Identity=32.6732673267327, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI17562904, Length=218, Percent_Identity=31.1926605504587, Blast_Score=105, Evalue=4e-23, Organism=Caenorhabditis elegans, GI17560220, Length=274, Percent_Identity=31.7518248175182, Blast_Score=100, Evalue=6e-22, Organism=Caenorhabditis elegans, GI17560676, Length=256, Percent_Identity=26.953125, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17560332, Length=267, Percent_Identity=28.8389513108614, Blast_Score=97, Evalue=9e-21, Organism=Caenorhabditis elegans, GI72000259, Length=264, Percent_Identity=30.3030303030303, Blast_Score=97, Evalue=9e-21, Organism=Caenorhabditis elegans, GI17538182, Length=231, Percent_Identity=35.0649350649351, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17561402, Length=264, Percent_Identity=29.1666666666667, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17555706, Length=257, Percent_Identity=32.6848249027237, Blast_Score=94, Evalue=8e-20, Organism=Caenorhabditis elegans, GI17562910, Length=267, Percent_Identity=26.9662921348315, Blast_Score=94, Evalue=8e-20, Organism=Caenorhabditis elegans, GI25147288, Length=251, Percent_Identity=29.4820717131474, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17562990, Length=270, Percent_Identity=29.6296296296296, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17560150, Length=266, Percent_Identity=28.9473684210526, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17567345, Length=208, Percent_Identity=30.7692307692308, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17538486, Length=210, Percent_Identity=31.4285714285714, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17563726, Length=268, Percent_Identity=28.3582089552239, Blast_Score=87, Evalue=7e-18, Organism=Caenorhabditis elegans, GI17544670, Length=275, Percent_Identity=25.8181818181818, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17564282, Length=210, Percent_Identity=27.1428571428571, Blast_Score=84, Evalue=8e-17, Organism=Caenorhabditis elegans, GI17565030, Length=208, Percent_Identity=33.6538461538462, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI115534694, Length=263, Percent_Identity=28.5171102661597, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17568967, Length=200, Percent_Identity=29, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193203115, Length=200, Percent_Identity=26.5, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI193203117, Length=196, Percent_Identity=27.0408163265306, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI25152911, Length=241, Percent_Identity=30.2904564315353, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=200, Percent_Identity=31, Blast_Score=83, Evalue=4e-17, Organism=Saccharomyces cerevisiae, GI6323882, Length=266, Percent_Identity=24.812030075188, Blast_Score=68, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6324126, Length=257, Percent_Identity=24.124513618677, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI23397609, Length=254, Percent_Identity=35.4330708661417, Blast_Score=137, Evalue=6e-33, Organism=Drosophila melanogaster, GI21357041, Length=258, Percent_Identity=34.8837209302326, Blast_Score=121, Evalue=5e-28, Organism=Drosophila melanogaster, GI21355319, Length=256, Percent_Identity=31.640625, Blast_Score=117, Evalue=6e-27, Organism=Drosophila melanogaster, GI28571526, Length=255, Percent_Identity=34.5098039215686, Blast_Score=115, Evalue=3e-26, Organism=Drosophila melanogaster, GI24644339, Length=258, Percent_Identity=32.9457364341085, Blast_Score=114, Evalue=6e-26, Organism=Drosophila melanogaster, GI24644337, Length=229, Percent_Identity=33.6244541484716, Blast_Score=100, Evalue=9e-22, Organism=Drosophila melanogaster, GI24639444, Length=254, Percent_Identity=31.1023622047244, Blast_Score=98, Evalue=7e-21, Organism=Drosophila melanogaster, GI17737361, Length=228, Percent_Identity=33.3333333333333, Blast_Score=81, Evalue=7e-16, Organism=Drosophila melanogaster, GI21358495, Length=248, Percent_Identity=27.8225806451613, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI161076933, Length=197, Percent_Identity=33.502538071066, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24584748, Length=197, Percent_Identity=33.502538071066, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI28574402, Length=213, Percent_Identity=32.8638497652582, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24584744, Length=213, Percent_Identity=32.8638497652582, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI18859837, Length=195, Percent_Identity=27.6923076923077, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24640442, Length=198, Percent_Identity=31.8181818181818, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI24643142, Length=251, Percent_Identity=27.8884462151394, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI24649181, Length=205, Percent_Identity=30.7317073170732, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI24641232, Length=243, Percent_Identity=29.2181069958848, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24665247, Length=205, Percent_Identity=29.2682926829268, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI21357673, Length=202, Percent_Identity=28.2178217821782, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI221331216, Length=205, Percent_Identity=29.2682926829268, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24665243, Length=205, Percent_Identity=29.2682926829268, Blast_Score=64, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 28642; Mature: 28642
Theoretical pI: Translated: 7.20; Mature: 7.20
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEQIPDPQPASRSLKGRVAIVTGAGSRADGIGNGRAAAILLARDGARVALIDSVREWAEV CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEHHHHHHHHHHH THRMIVEEGGEAEVIACDVSRDEDCRSAVARAVELWGRVDILVNNVGIGGPQGTAEDVDL HHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCH EAWDQALRINVTSMMLMARHAIPHMRAQGKGAIVNVASVAGLIGGHPSLLYPTSKGAVVN HHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCEEEHHHHHHHHCCCCCEEEECCCCCEEH MTRAMAAHHGEQGIRVNCVAPGMVYTPMVYAKGMSPEKREARRNRSFLRTEGSGWDVGQA HHHHHHHHCCCCCCEEEEECCCHHHCCHHEECCCCCHHHHHHHCCHHEEECCCCCCHHHH IRYLVSDESGWVTGAVLPVDAGATAGRHSY HHHHHCCCCCEEEEEEEEECCCCCCCCCCC >Mature Secondary Structure MEQIPDPQPASRSLKGRVAIVTGAGSRADGIGNGRAAAILLARDGARVALIDSVREWAEV CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEHHHHHHHHHHH THRMIVEEGGEAEVIACDVSRDEDCRSAVARAVELWGRVDILVNNVGIGGPQGTAEDVDL HHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCH EAWDQALRINVTSMMLMARHAIPHMRAQGKGAIVNVASVAGLIGGHPSLLYPTSKGAVVN HHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCEEEHHHHHHHHCCCCCEEEECCCCCEEH MTRAMAAHHGEQGIRVNCVAPGMVYTPMVYAKGMSPEKREARRNRSFLRTEGSGWDVGQA HHHHHHHHCCCCCCEEEEECCCHHHCCHHEECCCCCHHHHHHHCCHHEEECCCCCCHHHH IRYLVSDESGWVTGAVLPVDAGATAGRHSY HHHHHCCCCCEEEEEEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10360571 [H]