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The map label for this gene is nosD [H]

Identifier: 94313837

GI number: 94313837

Start: 1575998

End: 1577275

Strand: Reverse

Name: nosD [H]

Synonym: Rmet_4915

Alternate gene names: 94313837

Gene position: 1577275-1575998 (Counterclockwise)

Preceding gene: 94313838

Following gene: 94313836

Centisome position: 61.13

GC content: 63.69

Gene sequence:

>1278_bases
ATGAAGTGGGTCCCGATTCTGATTCTTCTTGCAGGATGGCTGACGGGCGCGCAGGGCGCGACCGTGCGGGTTGCGCCCGG
GCGGCCGCTCCAGGCTGCGATCGATGCGGCCCGGCCCGGCGACGTGCTGGAGATCGAACGCGCCACGTACACGGGCAACT
TCGTGATCGGCAAGGCCCTGACGCTGCGCGGGGTGGATCGTCCGACGATCAGCGGCGGCCAGCACGGGGACACCTTGCGC
GTCACCGCGTCGGACGTCGTTATCGAGGGATTGATCGTGCGCGATTCCGGAGACAGCCTGAAGGACCAGAACGCCGGCAT
CAATATCCTGCCGGGGGCGCACCGCGCCGTGGTGCGGCATTGCGACCTGACCTACAACCTGTTCGGCCTGTGGATCGAAA
AGGCGGATGACGTGCGCGTCGAAGGCAATACCATCACCGGCAAGCGCGACTACAACTCCGCGCAGCGCGGCAATGGCGTA
CAGCTCTACAACACCAAAGGCGCCCGCATTATCGACAACAACATCAGCTTTGTGCGCGATGCGCTCTACGTCGATGTGTC
GCACCACGCGATCTTCAAGGGAAACCGGCTGCACCATAGCCGCTACGGCACGCACTACATGAACTCCTACTACAACCTGT
GGGAGGACAATGACAGCTACAACAATCGCGGCGGGCTGGCGTTGATGGAGGTGCGCGACCAGGTCGTGCGCAATAACCGG
ACCTGGGGCAATGCCGACCACGGCATCATGCTGCGCACGCTGCAGGACTCGCGCGTGGAGAACAACGTCGTCGCCGACAA
TGACCGTGGGTTCTTTATCTACGACGTCGAATACACGGAGTTGCGCGGCAACCTGGTCATCGGCAATCAGGTCGGCGTCC
ACCTTTCGGCCGGATCAACGCGCAACGTGGTGCAGGGCAACGACTTCATCGGCAACCGGGAACAGGTGCGCTATCTGGGC
GCGCGCGATGAACCCTGGGGCGGGCGCAAACCGTCGGAACGCGATCAGGGCAACTTCTGGAGCGACTACCTCGGCTGGGA
CCGCGATGGCGATGGCATTGGCGATCTGCCCTATGAGGCCAGCGATGTCCTCGACCGCCTGATCTGGCGTCATCCGGGCG
TCCAGTTGCTACTGGCCAGCCCTGCCGTGCAGGCACTGCGCTTCGTGAGCCGGCAGTTCCCCGTTCTGCGCGTGCCGACC
GTCGTCGACGCCTACCCGCGGGCGCAGCCCGTCAACAAGAATTGGAGTACCTGGCGTGACAGAGCACATTCACGTTGA

Upstream 100 bases:

>100_bases
GCGCGACCGTGATGGACATGCTCAGCTACGTCGGATTCAAGAACCTGCTGATTGGCGCCGCGTTGTTCCTGATGCTGAAG
GCGCTTGGGTTGCTCCAGGT

Downstream 100 bases:

>100_bases
AGGGCAGGCCGCCATCGCGCTGCGTGGCGTTTGCAAGGACTATGGCGCTGTCCGGGCCGTCGACGACGTCGATCTGGAAA
TCGGTTACGGCGAACTGTTC

Product: putative periplasmic copper-binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 425; Mature: 425

Protein sequence:

>425_residues
MKWVPILILLAGWLTGAQGATVRVAPGRPLQAAIDAARPGDVLEIERATYTGNFVIGKALTLRGVDRPTISGGQHGDTLR
VTASDVVIEGLIVRDSGDSLKDQNAGINILPGAHRAVVRHCDLTYNLFGLWIEKADDVRVEGNTITGKRDYNSAQRGNGV
QLYNTKGARIIDNNISFVRDALYVDVSHHAIFKGNRLHHSRYGTHYMNSYYNLWEDNDSYNNRGGLALMEVRDQVVRNNR
TWGNADHGIMLRTLQDSRVENNVVADNDRGFFIYDVEYTELRGNLVIGNQVGVHLSAGSTRNVVQGNDFIGNREQVRYLG
ARDEPWGGRKPSERDQGNFWSDYLGWDRDGDGIGDLPYEASDVLDRLIWRHPGVQLLLASPAVQALRFVSRQFPVLRVPT
VVDAYPRAQPVNKNWSTWRDRAHSR

Sequences:

>Translated_425_residues
MKWVPILILLAGWLTGAQGATVRVAPGRPLQAAIDAARPGDVLEIERATYTGNFVIGKALTLRGVDRPTISGGQHGDTLR
VTASDVVIEGLIVRDSGDSLKDQNAGINILPGAHRAVVRHCDLTYNLFGLWIEKADDVRVEGNTITGKRDYNSAQRGNGV
QLYNTKGARIIDNNISFVRDALYVDVSHHAIFKGNRLHHSRYGTHYMNSYYNLWEDNDSYNNRGGLALMEVRDQVVRNNR
TWGNADHGIMLRTLQDSRVENNVVADNDRGFFIYDVEYTELRGNLVIGNQVGVHLSAGSTRNVVQGNDFIGNREQVRYLG
ARDEPWGGRKPSERDQGNFWSDYLGWDRDGDGIGDLPYEASDVLDRLIWRHPGVQLLLASPAVQALRFVSRQFPVLRVPT
VVDAYPRAQPVNKNWSTWRDRAHSR
>Mature_425_residues
MKWVPILILLAGWLTGAQGATVRVAPGRPLQAAIDAARPGDVLEIERATYTGNFVIGKALTLRGVDRPTISGGQHGDTLR
VTASDVVIEGLIVRDSGDSLKDQNAGINILPGAHRAVVRHCDLTYNLFGLWIEKADDVRVEGNTITGKRDYNSAQRGNGV
QLYNTKGARIIDNNISFVRDALYVDVSHHAIFKGNRLHHSRYGTHYMNSYYNLWEDNDSYNNRGGLALMEVRDQVVRNNR
TWGNADHGIMLRTLQDSRVENNVVADNDRGFFIYDVEYTELRGNLVIGNQVGVHLSAGSTRNVVQGNDFIGNREQVRYLG
ARDEPWGGRKPSERDQGNFWSDYLGWDRDGDGIGDLPYEASDVLDRLIWRHPGVQLLLASPAVQALRFVSRQFPVLRVPT
VVDAYPRAQPVNKNWSTWRDRAHSR

Specific function: Involved in copper processing and transport; in the assembly of the copper chromophores of nitrous oxide reductase [H]

COG id: COG3420

COG function: function code P; Nitrous oxidase accessory protein

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006633
- InterPro:   IPR007742
- InterPro:   IPR022441
- InterPro:   IPR006626
- InterPro:   IPR012334
- InterPro:   IPR011050 [H]

Pfam domain/function: PF05048 NosD [H]

EC number: NA

Molecular weight: Translated: 47594; Mature: 47594

Theoretical pI: Translated: 8.38; Mature: 8.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKWVPILILLAGWLTGAQGATVRVAPGRPLQAAIDAARPGDVLEIERATYTGNFVIGKAL
CCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHCCCCCCEEEEEEEEEECCEEEECEE
TLRGVDRPTISGGQHGDTLRVTASDVVIEGLIVRDSGDSLKDQNAGINILPGAHRAVVRH
EEECCCCCCCCCCCCCCEEEEEECCEEEEEEEEECCCCCCCCCCCCEEECCCCHHHHHHH
CDLTYNLFGLWIEKADDVRVEGNTITGKRDYNSAQRGNGVQLYNTKGARIIDNNISFVRD
CCCEEEEEEEEEECCCCEEEECCEECCCCCCCCHHCCCCEEEEECCCCEEEECCHHHEEH
ALYVDVSHHAIFKGNRLHHSRYGTHYMNSYYNLWEDNDSYNNRGGLALMEVRDQVVRNNR
EEEEEECCCEEEECCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHCCC
TWGNADHGIMLRTLQDSRVENNVVADNDRGFFIYDVEYTELRGNLVIGNQVGVHLSAGST
CCCCCCCCEEEEEECCCCCCCCEEEECCCEEEEEEEEEEEECCCEEECCCEEEEEECCCC
RNVVQGNDFIGNREQVRYLGARDEPWGGRKPSERDQGNFWSDYLGWDRDGDGIGDLPYEA
CCEECCCCCCCCHHHEEEECCCCCCCCCCCCCCCCCCCEEHHHCCCCCCCCCCCCCCCCH
SDVLDRLIWRHPGVQLLLASPAVQALRFVSRQFPVLRVPTVVDAYPRAQPVNKNWSTWRD
HHHHHHHHHCCCCCEEEEECHHHHHHHHHHHCCCEEECCHHHCCCCCCCCCCCCHHHHHH
RAHSR
HHCCC
>Mature Secondary Structure
MKWVPILILLAGWLTGAQGATVRVAPGRPLQAAIDAARPGDVLEIERATYTGNFVIGKAL
CCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHCCCCCCEEEEEEEEEECCEEEECEE
TLRGVDRPTISGGQHGDTLRVTASDVVIEGLIVRDSGDSLKDQNAGINILPGAHRAVVRH
EEECCCCCCCCCCCCCCEEEEEECCEEEEEEEEECCCCCCCCCCCCEEECCCCHHHHHHH
CDLTYNLFGLWIEKADDVRVEGNTITGKRDYNSAQRGNGVQLYNTKGARIIDNNISFVRD
CCCEEEEEEEEEECCCCEEEECCEECCCCCCCCHHCCCCEEEEECCCCEEEECCHHHEEH
ALYVDVSHHAIFKGNRLHHSRYGTHYMNSYYNLWEDNDSYNNRGGLALMEVRDQVVRNNR
EEEEEECCCEEEECCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHCCC
TWGNADHGIMLRTLQDSRVENNVVADNDRGFFIYDVEYTELRGNLVIGNQVGVHLSAGST
CCCCCCCCEEEEEECCCCCCCCEEEECCCEEEEEEEEEEEECCCEEECCCEEEEEECCCC
RNVVQGNDFIGNREQVRYLGARDEPWGGRKPSERDQGNFWSDYLGWDRDGDGIGDLPYEA
CCEECCCCCCCCHHHEEEECCCCCCCCCCCCCCCCCCCEEHHHCCCCCCCCCCCCCCCCH
SDVLDRLIWRHPGVQLLLASPAVQALRFVSRQFPVLRVPTVVDAYPRAQPVNKNWSTWRD
HHHHHHHHHCCCCCEEEEECHHHHHHHHHHHCCCEEECCHHHCCCCCCCCCCCCHHHHHH
RAHSR
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]