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The map label for this gene is ycdC [C]

Identifier: 94313831

GI number: 94313831

Start: 1571520

End: 1572125

Strand: Direct

Name: ycdC [C]

Synonym: Rmet_4909

Alternate gene names: 94313831

Gene position: 1571520-1572125 (Clockwise)

Preceding gene: 291481546

Following gene: 291481547

Centisome position: 60.91

GC content: 61.72

Gene sequence:

>606_bases
ATGAAAACGTCGTCCGTACGCGAACAACTGCTTGAACACGCTTCGGTGCTGATGCGACGGCGTGGCTATAACGGCTTCAG
CTATCGCGACCTCGCGGAGCTGGTGGGCGTGAAGACCTCGAGCATTCATTACTACTTCCCGTCCAAGGACGACCTGGTGC
TGGAAGTGGTACGTCAGTACCGCCAAACGTCGGTGGCCCGCCTCGCGGCGATCGACACCTCGCTTCCACTGATCGAACAG
GCGCGGAAGTATGTACTGCCGCTGAGCAATGGCATCGACCTCGGGCAGATCTGTCTGATCGGCATGTTGGCCGCAGAGGT
GATGGTCCTGCCGCAAGCGGTTCGCGCGCTGCTGCAGGAGCATTTCCAGGCGAACGAGAACTTCATCGCCGACATGCTGC
GCCGCGCCGAGGCAGAACGCGGCCAGCAGTACCCGGTGCCGCCCCAGCTACTGGCCAAGGTGCTTTATGGCGCGATCCAG
AACGGACTGATCACCGCGCGGATGTCCGGCTCGAATGATCGAATCGACGCCGCAGCGAATATGCTGATTGGCGCCGTTGG
CGGCTCGATGTGCGCCATCGAGGAACACGAAGCCGTAGCCGCCTAG

Upstream 100 bases:

>100_bases
GCAGCGGCGCCCTTGTCTCGCTCGTTGCAAAGTCGCTGTCGATCTGAGACAGCGAAAATCGGAGGGTCCCCCGCGAAAGC
GAAAGCTGGGGACAGTCGCC

Downstream 100 bases:

>100_bases
GCCTGGCATTACCGTTTTCGGCGCATCACGCGCCCGACGCCCGCCGTCTTGCTCTCGCGGCGGGCGTTGTTTTCGTTCTC
GCTTCCGCTTCCGCCCCCAT

Product: TetR/AcrR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator; Transcriptional Regulatory Protein; Transcriptional Regulator Protein; Regulatory Protein TetR; TetR Family Regulatory Protein; TetR/AcrR Family Transcriptional Regulator; Transcriptional Regulator Protein TetR Family; Transcriptional Regulator Of TetR Family Protein; TetR-Family Transcriptional Regulator; Transcriptional Regulator Protein Tetr Family

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MKTSSVREQLLEHASVLMRRRGYNGFSYRDLAELVGVKTSSIHYYFPSKDDLVLEVVRQYRQTSVARLAAIDTSLPLIEQ
ARKYVLPLSNGIDLGQICLIGMLAAEVMVLPQAVRALLQEHFQANENFIADMLRRAEAERGQQYPVPPQLLAKVLYGAIQ
NGLITARMSGSNDRIDAAANMLIGAVGGSMCAIEEHEAVAA

Sequences:

>Translated_201_residues
MKTSSVREQLLEHASVLMRRRGYNGFSYRDLAELVGVKTSSIHYYFPSKDDLVLEVVRQYRQTSVARLAAIDTSLPLIEQ
ARKYVLPLSNGIDLGQICLIGMLAAEVMVLPQAVRALLQEHFQANENFIADMLRRAEAERGQQYPVPPQLLAKVLYGAIQ
NGLITARMSGSNDRIDAAANMLIGAVGGSMCAIEEHEAVAA
>Mature_201_residues
MKTSSVREQLLEHASVLMRRRGYNGFSYRDLAELVGVKTSSIHYYFPSKDDLVLEVVRQYRQTSVARLAAIDTSLPLIEQ
ARKYVLPLSNGIDLGQICLIGMLAAEVMVLPQAVRALLQEHFQANENFIADMLRRAEAERGQQYPVPPQLLAKVLYGAIQ
NGLITARMSGSNDRIDAAANMLIGAVGGSMCAIEEHEAVAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22132; Mature: 22132

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTSSVREQLLEHASVLMRRRGYNGFSYRDLAELVGVKTSSIHYYFPSKDDLVLEVVRQY
CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHH
RQTSVARLAAIDTSLPLIEQARKYVLPLSNGIDLGQICLIGMLAAEVMVLPQAVRALLQE
HHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
HFQANENFIADMLRRAEAERGQQYPVPPQLLAKVLYGAIQNGLITARMSGSNDRIDAAAN
HHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHH
MLIGAVGGSMCAIEEHEAVAA
HHHHHHCCCEEEEHHHHHHCC
>Mature Secondary Structure
MKTSSVREQLLEHASVLMRRRGYNGFSYRDLAELVGVKTSSIHYYFPSKDDLVLEVVRQY
CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHH
RQTSVARLAAIDTSLPLIEQARKYVLPLSNGIDLGQICLIGMLAAEVMVLPQAVRALLQE
HHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
HFQANENFIADMLRRAEAERGQQYPVPPQLLAKVLYGAIQNGLITARMSGSNDRIDAAAN
HHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHH
MLIGAVGGSMCAIEEHEAVAA
HHHHHHCCCEEEEHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA