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The map label for this gene is rhaS [H]

Identifier: 94313793

GI number: 94313793

Start: 1533290

End: 1534375

Strand: Direct

Name: rhaS [H]

Synonym: Rmet_4871

Alternate gene names: 94313793

Gene position: 1533290-1534375 (Clockwise)

Preceding gene: 94313791

Following gene: 94313795

Centisome position: 59.43

GC content: 67.68

Gene sequence:

>1086_bases
ATGGCCGATCCCGCTACCACGTCCAATCACCCCCTGCACGTCAAGTTGCTATGGCTGCCCGATGCGATGCCCGGCACGCT
GTTCGGCGCGCTCGACGTGCTGCGCACGGCGGCCGGCGTCGCCCAATTGCAGCGGCCTGGCGAATCGAACCTGCTGACGT
GGGAAATCATCGGTGGCAATGGCCGGGCACTGCCCGCGCCGCTGCCTGGCCTGCAGCCGGTACCCGCCCGGCGTGGCCAG
CGCCATGGCCGGACGCTGATGATCGTGCCCGGATTGATGGCCCATAGCGCGCCGCATCTGAGCGAGATGGTTACGAACGA
TACCGTCACGCAGCGTACGATCGCGCGTCATGTGGACGCAGGCGGCTGGCTGGCGGCCATCTACTCGGGCATGGTTTACC
CGCTGGCGCTGGGCCTGCTCGACGGCGCGCGATGCGGGGCGCCGTGGATGTTCCAAAGCTCGCTGGCACAGCGATTCCCG
GGTTGCGACCTGTCCTCGGACGAACCGATAGGCCTGCACGAACGCGTGTTCCATTGCGTCGCCCCGGCGCTGCTGACCGA
ATTCATGCTGCGCGTGCTGGGGCATCTGCACGACCCTGACCTCGCGCAGACTGTCTCGCGCTTGCTGCTCTATCAACAGG
AACGCCAGCAATGGGTGCCGGAACTGGTTTCGCAGCGCTGGCTCGGTAAAACAACGGACAGCCCGGTGTATCGCGCCATT
GGCTGGCTGCAGGCCCACGTCGACGAGCCATACCGGCTTGGCGCCGTGGCCGAGGCGGCAGCCGTCAGCGAACGGACACT
GCTGCGCCATTTTCGGCAGGTCACCGGGCAGACGCCTCTCGACTACCTGCACCGGCTGCGCGTGGAGCGCGCGCGCATGT
TGCTCGAAGTCACGCTGCATGGCACGCAGGCCATCGCCGAAGCGTGCGGCTACAGCGATGCCGCGGCGTTCCGGCGGCTG
TTTCAGCGCGCCATGCAGATGTCGATGTCGGAGTACCGCACGCGCTTTGCGTTGCGCACGCGCCGCCGTTACTGGCGAGT
AGAAGGCCAGGCAGCGCGACGTGGGCGCGCCGCGCCGCAGGCGTGA

Upstream 100 bases:

>100_bases
TCCCAAAGCCGATCCCGCCACACCCCGTTCGCTCGCCGTCTTTCCCCTTCTTTCGCCTATTTCATCCTTCTCGTCCTTCT
CGCCCTTCTCGCCCCCACGC

Downstream 100 bases:

>100_bases
AGTGTCCTGCGATGAGTCGCCGGAACCTTTAACTGCTCAGGGCGATGTGATTGATGACGTTTTCCACGCCGTGCACATAC
CAGGCGTCCCGTTCAACCTG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: L-rhamnose operon regulatory protein rhaS [H]

Number of amino acids: Translated: 361; Mature: 360

Protein sequence:

>361_residues
MADPATTSNHPLHVKLLWLPDAMPGTLFGALDVLRTAAGVAQLQRPGESNLLTWEIIGGNGRALPAPLPGLQPVPARRGQ
RHGRTLMIVPGLMAHSAPHLSEMVTNDTVTQRTIARHVDAGGWLAAIYSGMVYPLALGLLDGARCGAPWMFQSSLAQRFP
GCDLSSDEPIGLHERVFHCVAPALLTEFMLRVLGHLHDPDLAQTVSRLLLYQQERQQWVPELVSQRWLGKTTDSPVYRAI
GWLQAHVDEPYRLGAVAEAAAVSERTLLRHFRQVTGQTPLDYLHRLRVERARMLLEVTLHGTQAIAEACGYSDAAAFRRL
FQRAMQMSMSEYRTRFALRTRRRYWRVEGQAARRGRAAPQA

Sequences:

>Translated_361_residues
MADPATTSNHPLHVKLLWLPDAMPGTLFGALDVLRTAAGVAQLQRPGESNLLTWEIIGGNGRALPAPLPGLQPVPARRGQ
RHGRTLMIVPGLMAHSAPHLSEMVTNDTVTQRTIARHVDAGGWLAAIYSGMVYPLALGLLDGARCGAPWMFQSSLAQRFP
GCDLSSDEPIGLHERVFHCVAPALLTEFMLRVLGHLHDPDLAQTVSRLLLYQQERQQWVPELVSQRWLGKTTDSPVYRAI
GWLQAHVDEPYRLGAVAEAAAVSERTLLRHFRQVTGQTPLDYLHRLRVERARMLLEVTLHGTQAIAEACGYSDAAAFRRL
FQRAMQMSMSEYRTRFALRTRRRYWRVEGQAARRGRAAPQA
>Mature_360_residues
ADPATTSNHPLHVKLLWLPDAMPGTLFGALDVLRTAAGVAQLQRPGESNLLTWEIIGGNGRALPAPLPGLQPVPARRGQR
HGRTLMIVPGLMAHSAPHLSEMVTNDTVTQRTIARHVDAGGWLAAIYSGMVYPLALGLLDGARCGAPWMFQSSLAQRFPG
CDLSSDEPIGLHERVFHCVAPALLTEFMLRVLGHLHDPDLAQTVSRLLLYQQERQQWVPELVSQRWLGKTTDSPVYRAIG
WLQAHVDEPYRLGAVAEAAAVSERTLLRHFRQVTGQTPLDYLHRLRVERARMLLEVTLHGTQAIAEACGYSDAAAFRRLF
QRAMQMSMSEYRTRFALRTRRRYWRVEGQAARRGRAAPQA

Specific function: Activates expression of the rhaBAD and rhaT operons [H]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=136, Percent_Identity=33.0882352941176, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 40203; Mature: 40072

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADPATTSNHPLHVKLLWLPDAMPGTLFGALDVLRTAAGVAQLQRPGESNLLTWEIIGGN
CCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC
GRALPAPLPGLQPVPARRGQRHGRTLMIVPGLMAHSAPHLSEMVTNDTVTQRTIARHVDA
CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHCCCHHHHHHHHCCHHHHHHHHHHCCC
GGWLAAIYSGMVYPLALGLLDGARCGAPWMFQSSLAQRFPGCDLSSDEPIGLHERVFHCV
CHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
APALLTEFMLRVLGHLHDPDLAQTVSRLLLYQQERQQWVPELVSQRWLGKTTDSPVYRAI
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
GWLQAHVDEPYRLGAVAEAAAVSERTLLRHFRQVTGQTPLDYLHRLRVERARMLLEVTLH
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
GTQAIAEACGYSDAAAFRRLFQRAMQMSMSEYRTRFALRTRRRYWRVEGQAARRGRAAPQ
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCC
A
C
>Mature Secondary Structure 
ADPATTSNHPLHVKLLWLPDAMPGTLFGALDVLRTAAGVAQLQRPGESNLLTWEIIGGN
CCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC
GRALPAPLPGLQPVPARRGQRHGRTLMIVPGLMAHSAPHLSEMVTNDTVTQRTIARHVDA
CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHCCCHHHHHHHHCCHHHHHHHHHHCCC
GGWLAAIYSGMVYPLALGLLDGARCGAPWMFQSSLAQRFPGCDLSSDEPIGLHERVFHCV
CHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
APALLTEFMLRVLGHLHDPDLAQTVSRLLLYQQERQQWVPELVSQRWLGKTTDSPVYRAI
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
GWLQAHVDEPYRLGAVAEAAAVSERTLLRHFRQVTGQTPLDYLHRLRVERARMLLEVTLH
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
GTQAIAEACGYSDAAAFRRLFQRAMQMSMSEYRTRFALRTRRRYWRVEGQAARRGRAAPQ
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA