Click here to switch to the map view.

The map label for this gene is yahA [C]

Identifier: 94313758

GI number: 94313758

Start: 1492096

End: 1492860

Strand: Reverse

Name: yahA [C]

Synonym: Rmet_4836

Alternate gene names: 94313758

Gene position: 1492860-1492096 (Counterclockwise)

Preceding gene: 94313759

Following gene: 94313756

Centisome position: 57.86

GC content: 66.67

Gene sequence:

>765_bases
ATGACGCCAACCATCGCCGATTGCCTCGAACAAAGGTACCTGCGACCGGTTTTCCAGCCGATCGGGTCGCTCGCCACTGG
CGACATCCTCGGGTATGAGGCACTGATACGCGGCCCGGTGGGCACGCCGCTGGAGAACCCTGTCGCCCTGTTCGCGGAAG
CGGCCAGGGCGGGGGCGCTGGTGCGCATGGAGCGGCTAGCCGCGCGCACCGCGATTGCCGCATTCATGCAGGCGCGCCTG
CCCGGCAAGCTATTCCTGAACTACAGCGCGGACTCCCTGCGTGATATCGAGGACACGCGGGAGGATGTGCGCAACTTCCT
GCAGCGCGTGGACATGCCTTCGGACCGCATCGTGCTGGAGCTGACCGAGCAGGCACCACTGGGGCCGCTGGAATCGCTGA
CCAAGGCCGTCTTCTCGATCCGCGCGCGCGGCGCGCAGTTCGCGCTCGACGACTACGGCACCGGCCATGCCAACCTCGGC
CAGTGGATCGCGATGAAGCCCGATTACGTGAAGATCGCCCGCGTCGTCATCGACGGCATTGCCACGTCGACGTTCCAGCT
CGAAGCCGTGCGCGCGCTGTGCAAGCTGGCGAAGCTCAGTGGCACGAAGCTGGTGGCTGAGGGCATCGAGCGCGTGGACG
ATCTGCTCGTGTGCCGCGAACTCGGTATCGACTATGCGCAGGGTTACCTGTTGGCACGTCCCGCCGAGGTACCGGCGTTG
ACATTGTCGGAGGAGGCGCTGCGCGCGTTGCGCGCGGCGCCCTGA

Upstream 100 bases:

>100_bases
GGCGGAGGAGTTATGCCGATAGCTGCGGTGGGAGCGGATTCTTCCGATAGCAAGATCCGCATGAACCAACGCCAGTTTGA
GTGCAAGCCTTGTCGCCACC

Downstream 100 bases:

>100_bases
ATCACTGCCAGCGTCTGTGTGGCTGTGTCAGTGCGCTGTAGCCGGCGCCGCATCCGACTGAGCCGGCTCGCCGGCCACCG
AAGGTGCCACTGGCGGTACG

Product: putative diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 253

Protein sequence:

>254_residues
MTPTIADCLEQRYLRPVFQPIGSLATGDILGYEALIRGPVGTPLENPVALFAEAARAGALVRMERLAARTAIAAFMQARL
PGKLFLNYSADSLRDIEDTREDVRNFLQRVDMPSDRIVLELTEQAPLGPLESLTKAVFSIRARGAQFALDDYGTGHANLG
QWIAMKPDYVKIARVVIDGIATSTFQLEAVRALCKLAKLSGTKLVAEGIERVDDLLVCRELGIDYAQGYLLARPAEVPAL
TLSEEALRALRAAP

Sequences:

>Translated_254_residues
MTPTIADCLEQRYLRPVFQPIGSLATGDILGYEALIRGPVGTPLENPVALFAEAARAGALVRMERLAARTAIAAFMQARL
PGKLFLNYSADSLRDIEDTREDVRNFLQRVDMPSDRIVLELTEQAPLGPLESLTKAVFSIRARGAQFALDDYGTGHANLG
QWIAMKPDYVKIARVVIDGIATSTFQLEAVRALCKLAKLSGTKLVAEGIERVDDLLVCRELGIDYAQGYLLARPAEVPAL
TLSEEALRALRAAP
>Mature_253_residues
TPTIADCLEQRYLRPVFQPIGSLATGDILGYEALIRGPVGTPLENPVALFAEAARAGALVRMERLAARTAIAAFMQARLP
GKLFLNYSADSLRDIEDTREDVRNFLQRVDMPSDRIVLELTEQAPLGPLESLTKAVFSIRARGAQFALDDYGTGHANLGQ
WIAMKPDYVKIARVVIDGIATSTFQLEAVRALCKLAKLSGTKLVAEGIERVDDLLVCRELGIDYAQGYLLARPAEVPALT
LSEEALRALRAAP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1786507, Length=259, Percent_Identity=28.957528957529, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788502, Length=232, Percent_Identity=30.1724137931034, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI87082096, Length=128, Percent_Identity=32.03125, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87081743, Length=234, Percent_Identity=27.3504273504274, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1790496, Length=236, Percent_Identity=24.1525423728814, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI87081845, Length=229, Percent_Identity=27.5109170305677, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788849, Length=238, Percent_Identity=26.0504201680672, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787541, Length=251, Percent_Identity=26.6932270916335, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787055, Length=232, Percent_Identity=26.2931034482759, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 27679; Mature: 27548

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPTIADCLEQRYLRPVFQPIGSLATGDILGYEALIRGPVGTPLENPVALFAEAARAGAL
CCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
VRMERLAARTAIAAFMQARLPGKLFLNYSADSLRDIEDTREDVRNFLQRVDMPSDRIVLE
HHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
LTEQAPLGPLESLTKAVFSIRARGAQFALDDYGTGHANLGQWIAMKPDYVKIARVVIDGI
ECCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEECCCHHHHHHHHHHHHH
ATSTFQLEAVRALCKLAKLSGTKLVAEGIERVDDLLVCRELGIDYAQGYLLARPAEVPAL
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHCCEEEECCCCCCEE
TLSEEALRALRAAP
ECCHHHHHHHHCCC
>Mature Secondary Structure 
TPTIADCLEQRYLRPVFQPIGSLATGDILGYEALIRGPVGTPLENPVALFAEAARAGAL
CCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
VRMERLAARTAIAAFMQARLPGKLFLNYSADSLRDIEDTREDVRNFLQRVDMPSDRIVLE
HHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
LTEQAPLGPLESLTKAVFSIRARGAQFALDDYGTGHANLGQWIAMKPDYVKIARVVIDGI
ECCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEECCCHHHHHHHHHHHHH
ATSTFQLEAVRALCKLAKLSGTKLVAEGIERVDDLLVCRELGIDYAQGYLLARPAEVPAL
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHCCEEEECCCCCCEE
TLSEEALRALRAAP
ECCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1661370 [H]