Click here to switch to the map view.

The map label for this gene is ydcN [H]

Identifier: 94313728

GI number: 94313728

Start: 1453638

End: 1454249

Strand: Direct

Name: ydcN [H]

Synonym: Rmet_4806

Alternate gene names: 94313728

Gene position: 1453638-1454249 (Clockwise)

Preceding gene: 94313725

Following gene: 94313729

Centisome position: 56.34

GC content: 66.34

Gene sequence:

>612_bases
ATGACGATGTCGCAACCCTCCCCCTCCAAAACGCCGATGACGGCCGAGGGGCCGCCAGCCGTAGGCAGCGCGCTGCAGGC
GCTTCGGCAGAGCCAGCAACTGTCCCTGGACGAGCTGTCGCGCCGCGCCGGTGTCTCCAAGTCTATGCTTTCGCAGATCG
AACGGAACCTGGCGAACCCGACCGTGGCGGTGCTGTGGCGGCTGGCCAACGCGCTCGGCGTCAGCCTGACGGACTTCCTG
GCACAAGGGACTGCAGCGCCACAGGCGCCCGCCATCACCGTGGTGCCACCCCATGCCACACCGGCGCTCAAGAGCCCCGA
TACCCGCTGCGAGCTACGCATCCTTGGTCCGATCGACATGGCGGGGCGCTTCGAATGGTATGAGCTGTCGATCCAGCCGG
GCGGCGTGCTGGCGTCGGAGCCACATGAAGCAGGCACGCAGGAGCATCTGTCGGTGCTGACCGGGTCGATGACCGTCCGG
TCAGGTGGCGACGAGAAGAAGCTGAAGCACGGCGATACCGCACGCTACGGCGCGGATGTGGCGCATGCCATTGGTAATCC
GGGCAAAAGCGTGGCAACGGCCTTGCTGGTCGTAGTTCATCCGGGGACCTGA

Upstream 100 bases:

>100_bases
TCGACATGGCCAGACTCCCGGTGGTAGTGTCTCGGAACGCTCAATTCGATAAATCGAACGTGTTCTATATAACGAACATG
TCGTGCACTATAACGAACAG

Downstream 100 bases:

>100_bases
TCCGGACATCGCGCCCGCCACGTATGTCCCTGCGCCGGCTGAGGTTTTTTGATCGGCCGTATGATCATCCGCATGCGACG
GATACGCGCCTGGTGGGCAC

Product: putative DNA-binding transcriptional regulator, Helix-turn-helix motif

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MTMSQPSPSKTPMTAEGPPAVGSALQALRQSQQLSLDELSRRAGVSKSMLSQIERNLANPTVAVLWRLANALGVSLTDFL
AQGTAAPQAPAITVVPPHATPALKSPDTRCELRILGPIDMAGRFEWYELSIQPGGVLASEPHEAGTQEHLSVLTGSMTVR
SGGDEKKLKHGDTARYGADVAHAIGNPGKSVATALLVVVHPGT

Sequences:

>Translated_203_residues
MTMSQPSPSKTPMTAEGPPAVGSALQALRQSQQLSLDELSRRAGVSKSMLSQIERNLANPTVAVLWRLANALGVSLTDFL
AQGTAAPQAPAITVVPPHATPALKSPDTRCELRILGPIDMAGRFEWYELSIQPGGVLASEPHEAGTQEHLSVLTGSMTVR
SGGDEKKLKHGDTARYGADVAHAIGNPGKSVATALLVVVHPGT
>Mature_202_residues
TMSQPSPSKTPMTAEGPPAVGSALQALRQSQQLSLDELSRRAGVSKSMLSQIERNLANPTVAVLWRLANALGVSLTDFLA
QGTAAPQAPAITVVPPHATPALKSPDTRCELRILGPIDMAGRFEWYELSIQPGGVLASEPHEAGTQEHLSVLTGSMTVRS
GGDEKKLKHGDTARYGADVAHAIGNPGKSVATALLVVVHPGT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=183, Percent_Identity=32.7868852459016, Blast_Score=100, Evalue=1e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 21212; Mature: 21081

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMSQPSPSKTPMTAEGPPAVGSALQALRQSQQLSLDELSRRAGVSKSMLSQIERNLANP
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHCCH
TVAVLWRLANALGVSLTDFLAQGTAAPQAPAITVVPPHATPALKSPDTRCELRILGPIDM
HHHHHHHHHHHHCCHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCC
AGRFEWYELSIQPGGVLASEPHEAGTQEHLSVLTGSMTVRSGGDEKKLKHGDTARYGADV
CCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCEEEECCCCHHHHCCCCCHHHHHHH
AHAIGNPGKSVATALLVVVHPGT
HHHHCCCCHHHEEEEEEEECCCC
>Mature Secondary Structure 
TMSQPSPSKTPMTAEGPPAVGSALQALRQSQQLSLDELSRRAGVSKSMLSQIERNLANP
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHCCH
TVAVLWRLANALGVSLTDFLAQGTAAPQAPAITVVPPHATPALKSPDTRCELRILGPIDM
HHHHHHHHHHHHCCHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCC
AGRFEWYELSIQPGGVLASEPHEAGTQEHLSVLTGSMTVRSGGDEKKLKHGDTARYGADV
CCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCEEEECCCCHHHHCCCCCHHHHHHH
AHAIGNPGKSVATALLVVVHPGT
HHHHCCCCHHHEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]