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The map label for this gene is yobQ [H]

Identifier: 94313641

GI number: 94313641

Start: 1361687

End: 1362454

Strand: Direct

Name: yobQ [H]

Synonym: Rmet_4719

Alternate gene names: 94313641

Gene position: 1361687-1362454 (Clockwise)

Preceding gene: 94313640

Following gene: 94313642

Centisome position: 52.78

GC content: 66.93

Gene sequence:

>768_bases
ATGCCCAAGCTCGTTGAACACGCCTCGCCGTTGGTCGAGCCGCGCCGTTATTCGCCGCGGCCCTTCGGTCATGCGCATGA
CTACCATCAGTTGCTGTTCGGCGTGGACGGGGCCATCGAACTCCAAATTGACGGCCATGCGTACCGCGTCGATGACCAAC
ACGGCCTGGTTGTGCCTGCGGGCGCCCACCATGTCTGCGCGGGCCTGACCGAAAACCTCCAGCTCGTGGCGGACTTTCCG
GCCAGTTCCGTCGCCCTGCCTGCGCGGCTAATGGAGAACCCGCGTGCCTTCGCCATGGATGCCAGCTTCGCTGCCCGCGT
CCGCGCGTTGGCGACGCATCGCCCGTCTGGCGACCTGCCACTCCAGCACGCGTGGCATTGCGCAACGGCGCTCGCGGGCA
ATCTGGCATCGGCGCTGGGTCTCGATGCGGCCCGTAACGATGCCACGCATTTTCCGGCAATGGCCATCGATGCATGGCTG
CGCGCCAATCTCGCGTCGCCGTTGCGGGTAGACCAGCTTGCCGCGCGCATGGGCTGGGGCGCGCGTCGGTTCCACACGCT
GTTTTGCGAGGCGTTTGGCGATACCCCGCACGGCTATCAGACACGGCTGCGGCTGGACCAGGCCGTGCAATGGTTGATGG
CCGGTACGATGCCGCTCGCCGATATCGCCTATGGCGTTGGCTATCCCGATCAGACCACCTTCACACGCGCATTCGCCCGT
CGGTTCGGCAAGCCGCCCGGTGCGTGGCGGGCCGCCGCGCTGGCCTGA

Upstream 100 bases:

>100_bases
GCGCTATTGTTCGGCGATCGGCTCGCCCCGCTCCAGTGGCTCGGCATGGCCGTGGCCGGTATTGGCGTGTGGCTCTGTCA
GACGCAGGGCAACCCCCGAC

Downstream 100 bases:

>100_bases
TCTGCAGATTTCTCCCGCCGCGCGTATGATGCGCGCGTGTTCGAGCCAGCGAACCAGCGAACCAAAACGGGGAGACAACC
ATGAAGACAACGATCACGAC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MPKLVEHASPLVEPRRYSPRPFGHAHDYHQLLFGVDGAIELQIDGHAYRVDDQHGLVVPAGAHHVCAGLTENLQLVADFP
ASSVALPARLMENPRAFAMDASFAARVRALATHRPSGDLPLQHAWHCATALAGNLASALGLDAARNDATHFPAMAIDAWL
RANLASPLRVDQLAARMGWGARRFHTLFCEAFGDTPHGYQTRLRLDQAVQWLMAGTMPLADIAYGVGYPDQTTFTRAFAR
RFGKPPGAWRAAALA

Sequences:

>Translated_255_residues
MPKLVEHASPLVEPRRYSPRPFGHAHDYHQLLFGVDGAIELQIDGHAYRVDDQHGLVVPAGAHHVCAGLTENLQLVADFP
ASSVALPARLMENPRAFAMDASFAARVRALATHRPSGDLPLQHAWHCATALAGNLASALGLDAARNDATHFPAMAIDAWL
RANLASPLRVDQLAARMGWGARRFHTLFCEAFGDTPHGYQTRLRLDQAVQWLMAGTMPLADIAYGVGYPDQTTFTRAFAR
RFGKPPGAWRAAALA
>Mature_254_residues
PKLVEHASPLVEPRRYSPRPFGHAHDYHQLLFGVDGAIELQIDGHAYRVDDQHGLVVPAGAHHVCAGLTENLQLVADFPA
SSVALPARLMENPRAFAMDASFAARVRALATHRPSGDLPLQHAWHCATALAGNLASALGLDAARNDATHFPAMAIDAWLR
ANLASPLRVDQLAARMGWGARRFHTLFCEAFGDTPHGYQTRLRLDQAVQWLMAGTMPLADIAYGVGYPDQTTFTRAFARR
FGKPPGAWRAAALA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 27738; Mature: 27607

Theoretical pI: Translated: 8.17; Mature: 8.17

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKLVEHASPLVEPRRYSPRPFGHAHDYHQLLFGVDGAIELQIDGHAYRVDDQHGLVVPA
CCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCEEEEECCCCCEEEEC
GAHHVCAGLTENLQLVADFPASSVALPARLMENPRAFAMDASFAARVRALATHRPSGDLP
CCHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHCCCCCCCC
LQHAWHCATALAGNLASALGLDAARNDATHFPAMAIDAWLRANLASPLRVDQLAARMGWG
HHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCC
ARRFHTLFCEAFGDTPHGYQTRLRLDQAVQWLMAGTMPLADIAYGVGYPDQTTFTRAFAR
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHH
RFGKPPGAWRAAALA
HHCCCCCCCHHHHCC
>Mature Secondary Structure 
PKLVEHASPLVEPRRYSPRPFGHAHDYHQLLFGVDGAIELQIDGHAYRVDDQHGLVVPA
CCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCEEEEECCCCCEEEEC
GAHHVCAGLTENLQLVADFPASSVALPARLMENPRAFAMDASFAARVRALATHRPSGDLP
CCHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHCCCCCCCC
LQHAWHCATALAGNLASALGLDAARNDATHFPAMAIDAWLRANLASPLRVDQLAARMGWG
HHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCC
ARRFHTLFCEAFGDTPHGYQTRLRLDQAVQWLMAGTMPLADIAYGVGYPDQTTFTRAFAR
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHH
RFGKPPGAWRAAALA
HHCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]