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The map label for this gene is ypmQ [H]

Identifier: 94313617

GI number: 94313617

Start: 1330732

End: 1331439

Strand: Reverse

Name: ypmQ [H]

Synonym: Rmet_4695

Alternate gene names: 94313617

Gene position: 1331439-1330732 (Counterclockwise)

Preceding gene: 94313618

Following gene: 94313616

Centisome position: 51.6

GC content: 62.71

Gene sequence:

>708_bases
ATGCCGCCCTTGGCGCTGCTTGCCCACAATGGAGTAAACACCCGCCAGGGTGCGCGTCAGCGAAACGTCGAGGAGGGGAC
TCCCATGAAAGCGTACGCAAAGCGTTGGAGCAAAGTGGCGGCAGTGACCGCCGTTGGGCTGATCGTGTGCGTCTCGATGG
GCGCCGTCGGTCATGAATCCGACGATCCGCATTCCCATCACGAGATGAAACGGGAGATGCATACGTCCACGGTGGACTAT
CGCCTGCCGCCGGTGACGCTGGTGCGTGACGATGGGCAGGCCGTGTCGCTGGCCAATGAACTCGATGATGGCCGGCCCGT
GGTACTGACCTTCATCTACACCACGTGCACGTCGATCTGTCCGGTCATCAGCCAGACGCTGTCACAGCTTCAGGCGGAAC
TGGGTCCTGACCGGGACAAGGTGCATCTGGTCTCCATCTCGATCGACCCCGAGCACGACACCCCGGGACGGTTGCGGGAA
TATGCGGCGAAGTTCGGCGCGGGCCCGGAGTGGCAGCACTACACCGGCGCAGTGTCGGCCAGCGTTGCCGCCCAGAAGGC
CTTCAACGTTTATCACGAAGACAAGATGAATCACAGTCCGGTGGTCCTGCTGCGCGCGGCGCCGGGCAAGCCCTGGCTGC
GGATAGATGGTTTCGCGACGGCGGACGAGATCCTCCATGCGTACCACCATCTGATGGCGTCGAACTGA

Upstream 100 bases:

>100_bases
CGGGGCCGGATGGCACCCGGGTTGCGGCGGATGGGGACTGGACGGTGCCCTAGGCGCGCCGGGCGGAGGTTTACCTATCC
CAGTTAGGGGAGGGTTCCCC

Downstream 100 bases:

>100_bases
TCTCGCCGGGCGCACGAACATCGCGCCAGTCGTCCGAATGCGGAGGCCCACCATGAATGCGATTGCCCTGTCTCGTCTGT
CAGGTCCGGCACGTCTGGCG

Product: Sco1/SenC family protein

Products: NA

Alternate protein names: BsSco [H]

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MPPLALLAHNGVNTRQGARQRNVEEGTPMKAYAKRWSKVAAVTAVGLIVCVSMGAVGHESDDPHSHHEMKREMHTSTVDY
RLPPVTLVRDDGQAVSLANELDDGRPVVLTFIYTTCTSICPVISQTLSQLQAELGPDRDKVHLVSISIDPEHDTPGRLRE
YAAKFGAGPEWQHYTGAVSASVAAQKAFNVYHEDKMNHSPVVLLRAAPGKPWLRIDGFATADEILHAYHHLMASN

Sequences:

>Translated_235_residues
MPPLALLAHNGVNTRQGARQRNVEEGTPMKAYAKRWSKVAAVTAVGLIVCVSMGAVGHESDDPHSHHEMKREMHTSTVDY
RLPPVTLVRDDGQAVSLANELDDGRPVVLTFIYTTCTSICPVISQTLSQLQAELGPDRDKVHLVSISIDPEHDTPGRLRE
YAAKFGAGPEWQHYTGAVSASVAAQKAFNVYHEDKMNHSPVVLLRAAPGKPWLRIDGFATADEILHAYHHLMASN
>Mature_234_residues
PPLALLAHNGVNTRQGARQRNVEEGTPMKAYAKRWSKVAAVTAVGLIVCVSMGAVGHESDDPHSHHEMKREMHTSTVDYR
LPPVTLVRDDGQAVSLANELDDGRPVVLTFIYTTCTSICPVISQTLSQLQAELGPDRDKVHLVSISIDPEHDTPGRLREY
AAKFGAGPEWQHYTGAVSASVAAQKAFNVYHEDKMNHSPVVLLRAAPGKPWLRIDGFATADEILHAYHHLMASN

Specific function: Neccessary for insertion of copper into the active site of cytochrome c oxidase. May play a role in copper homeostasis or redox signaling [H]

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cell membrane; Lipid-anchor; Cytoplasmic side [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 25742; Mature: 25611

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPLALLAHNGVNTRQGARQRNVEEGTPMKAYAKRWSKVAAVTAVGLIVCVSMGAVGHES
CCCCEEEECCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DDPHSHHEMKREMHTSTVDYRLPPVTLVRDDGQAVSLANELDDGRPVVLTFIYTTCTSIC
CCCHHHHHHHHHHHHCCCCEECCCEEEEECCCCEEHHHHHCCCCCCEEEHHHHHHHHHHH
PVISQTLSQLQAELGPDRDKVHLVSISIDPEHDTPGRLREYAAKFGAGPEWQHYTGAVSA
HHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHH
SVAAQKAFNVYHEDKMNHSPVVLLRAAPGKPWLRIDGFATADEILHAYHHLMASN
HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PPLALLAHNGVNTRQGARQRNVEEGTPMKAYAKRWSKVAAVTAVGLIVCVSMGAVGHES
CCCEEEECCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DDPHSHHEMKREMHTSTVDYRLPPVTLVRDDGQAVSLANELDDGRPVVLTFIYTTCTSIC
CCCHHHHHHHHHHHHCCCCEECCCEEEEECCCCEEHHHHHCCCCCCEEEHHHHHHHHHHH
PVISQTLSQLQAELGPDRDKVHLVSISIDPEHDTPGRLREYAAKFGAGPEWQHYTGAVSA
HHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHH
SVAAQKAFNVYHEDKMNHSPVVLLRAAPGKPWLRIDGFATADEILHAYHHLMASN
HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]