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The map label for this gene is 94313480

Identifier: 94313480

GI number: 94313480

Start: 1168622

End: 1169227

Strand: Direct

Name: 94313480

Synonym: Rmet_4558

Alternate gene names: NA

Gene position: 1168622-1169227 (Clockwise)

Preceding gene: 94313477

Following gene: 94313482

Centisome position: 45.29

GC content: 67.0

Gene sequence:

>606_bases
ATGGCCACAAAGTCCCCACAGCGCGCGCAGGCTATCGTCACGAGCCTGCGGCGTGACATCGCATCCTGTACCCGATGCGC
CGCCGATCTGCCTGCCGGCCCGCGGCCCGTCGTGCAGTTCAGCGCCACGTCTCGCATCCTGATCATCGGCCAGGCGCCGG
GATCACGGGTACACGCCAGCGGCATTCCGTTTGATGACCCCAGCGGCGACCGCCTGCGTGAATGGACGGGTCTGAGCCAC
GACGTGTTCTACGATGCATCCCGCGTGGCGATCATGCCGATGGGCTTCTGCTACCCCGGCAAAGGCCCGAGCGGCGACCT
GCCACCACGCCGCGAGTGCGCGCCGCTTTGGCACGACGCCATCCTGCGGCTCCTGCCGGAAGACCGTCTGACCCTGCTCG
TTGGCAGCTACGCCCAAGCCTATTACCTGCAAGGCGAAGTCGGCGCCACGATGACGGAGATCGTGCGCGATTTCCGCCGT
TTCGGCCCCAATCTGTTTCCGCTGCCTCACCCTTCGTGGCGCGTTGTCGGCTGGATGCGCAAGCAGCCCTGGTTCGAAGC
CGAATTGCTGCCAGCGCTGCGGGCGGCCGTGCGCGCCAGGCTATGA

Upstream 100 bases:

>100_bases
CGGCGAGGATTGCGGTTTCGATTTGCGTCGTCATACTCTGGTCCTTTGCATCGCGTGGCGTAGAGGCCAGTAATATACGC
ACACCGCGTCGAATCCGCTC

Downstream 100 bases:

>100_bases
ATTTGCGGGATTCGACCTAACCGAGCGGCAGCGCCGTGCTGTACAGCACCTGCTTCAGCGCGAAACTCGACCGAATGCTC
GCCACGCCGGGGATGCGAGT

Product: uracil-DNA glycosylase superfamily

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 200

Protein sequence:

>201_residues
MATKSPQRAQAIVTSLRRDIASCTRCAADLPAGPRPVVQFSATSRILIIGQAPGSRVHASGIPFDDPSGDRLREWTGLSH
DVFYDASRVAIMPMGFCYPGKGPSGDLPPRRECAPLWHDAILRLLPEDRLTLLVGSYAQAYYLQGEVGATMTEIVRDFRR
FGPNLFPLPHPSWRVVGWMRKQPWFEAELLPALRAAVRARL

Sequences:

>Translated_201_residues
MATKSPQRAQAIVTSLRRDIASCTRCAADLPAGPRPVVQFSATSRILIIGQAPGSRVHASGIPFDDPSGDRLREWTGLSH
DVFYDASRVAIMPMGFCYPGKGPSGDLPPRRECAPLWHDAILRLLPEDRLTLLVGSYAQAYYLQGEVGATMTEIVRDFRR
FGPNLFPLPHPSWRVVGWMRKQPWFEAELLPALRAAVRARL
>Mature_200_residues
ATKSPQRAQAIVTSLRRDIASCTRCAADLPAGPRPVVQFSATSRILIIGQAPGSRVHASGIPFDDPSGDRLREWTGLSHD
VFYDASRVAIMPMGFCYPGKGPSGDLPPRRECAPLWHDAILRLLPEDRLTLLVGSYAQAYYLQGEVGATMTEIVRDFRRF
GPNLFPLPHPSWRVVGWMRKQPWFEAELLPALRAAVRARL

Specific function: Unknown

COG id: COG1573

COG function: function code L; Uracil-DNA glycosylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005122 [H]

Pfam domain/function: PF03167 UDG [H]

EC number: NA

Molecular weight: Translated: 22335; Mature: 22204

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATKSPQRAQAIVTSLRRDIASCTRCAADLPAGPRPVVQFSATSRILIIGQAPGSRVHAS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEEECCCCCEEECC
GIPFDDPSGDRLREWTGLSHDVFYDASRVAIMPMGFCYPGKGPSGDLPPRRECAPLWHDA
CCCCCCCCCCHHHHHCCCCHHHHCCCCCEEEEEECEECCCCCCCCCCCCCCHHHHHHHHH
ILRLLPEDRLTLLVGSYAQAYYLQGEVGATMTEIVRDFRRFGPNLFPLPHPSWRVVGWMR
HHHHCCCCCEEEEECCCHHEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHEEEEHH
KQPWFEAELLPALRAAVRARL
CCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ATKSPQRAQAIVTSLRRDIASCTRCAADLPAGPRPVVQFSATSRILIIGQAPGSRVHAS
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEEECCCCCEEECC
GIPFDDPSGDRLREWTGLSHDVFYDASRVAIMPMGFCYPGKGPSGDLPPRRECAPLWHDA
CCCCCCCCCCHHHHHCCCCHHHHCCCCCEEEEEECEECCCCCCCCCCCCCCHHHHHHHHH
ILRLLPEDRLTLLVGSYAQAYYLQGEVGATMTEIVRDFRRFGPNLFPLPHPSWRVVGWMR
HHHHCCCCCEEEEECCCHHEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHEEEEHH
KQPWFEAELLPALRAAVRARL
CCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]