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The map label for this gene is ytfH [C]

Identifier: 94313471

GI number: 94313471

Start: 1151950

End: 1152531

Strand: Reverse

Name: ytfH [C]

Synonym: Rmet_4546

Alternate gene names: 94313471

Gene position: 1152531-1151950 (Counterclockwise)

Preceding gene: 94313472

Following gene: 94313470

Centisome position: 44.67

GC content: 63.57

Gene sequence:

>582_bases
ATGTTTTCGCCAAACGGTCCGGACGATATGCAACGCAAGACTTTCCGCAATATGCAATGCCCGATCGCCCGCAGCCTCGA
GCGTGTGGGCGAATGGTGGAGCATTCTGATTCTGCGCGATGCGTTCTATGGCACGAAGCGCTTCGACGAGTTCCAGCGAA
ACCTCGATATCGCACCGAATATGCTGACGCGCCGGCTCAACGGGCTGGTCGAGGAAGGCCTGCTGGAAAAGCGCCAGTAT
TCGGAGCGCCCGCCGCGCTACGAGTACGTGCTGACCGATTGCGGACGGGATTTCCGCCCGGTATTGCTGGCGCTGCTGGC
CTGGGGCAATCGCAACTTCGCGCCGGAAGGGCCCAGTGTCCAGATCGTCGATCGCGAAACCGGCAAGGTGGTGGAACCGA
TGCTGGTGGATACCGAGAACGGCGAGCCGCTGCAGATGGGCAGGCGCCATGTGCTCAGGGCAGGGCCGGCGGCCGATGAG
TCCACGCGCGCGAGGCTTTCGTCCGCGACCTCTCATATGACAACGGCGGCTCCGACAGCCCCGGCAGCCCCTCTGGCGCA
GGAAGCCGGCAAGGTTGCGTGA

Upstream 100 bases:

>100_bases
GCGCCGCAATGGATGTTGCGGCGCCGTTTTTGTTTGTTGCGTTGCGTCTGTCGCCACCATTCCAGATCGTCCGACGTTGC
CGAACGTAGGTATCATCATC

Downstream 100 bases:

>100_bases
CGCGCCAGTGCCTTCCAGGTTGCTCCGAGAGCATTTCTGACATAGAGTCCAAGGCATAGCACCCGTCTTCCGACGGTTTT
TCCGCCGACTCCGGATACGA

Product: transcriptional regulator HxlR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MFSPNGPDDMQRKTFRNMQCPIARSLERVGEWWSILILRDAFYGTKRFDEFQRNLDIAPNMLTRRLNGLVEEGLLEKRQY
SERPPRYEYVLTDCGRDFRPVLLALLAWGNRNFAPEGPSVQIVDRETGKVVEPMLVDTENGEPLQMGRRHVLRAGPAADE
STRARLSSATSHMTTAAPTAPAAPLAQEAGKVA

Sequences:

>Translated_193_residues
MFSPNGPDDMQRKTFRNMQCPIARSLERVGEWWSILILRDAFYGTKRFDEFQRNLDIAPNMLTRRLNGLVEEGLLEKRQY
SERPPRYEYVLTDCGRDFRPVLLALLAWGNRNFAPEGPSVQIVDRETGKVVEPMLVDTENGEPLQMGRRHVLRAGPAADE
STRARLSSATSHMTTAAPTAPAAPLAQEAGKVA
>Mature_193_residues
MFSPNGPDDMQRKTFRNMQCPIARSLERVGEWWSILILRDAFYGTKRFDEFQRNLDIAPNMLTRRLNGLVEEGLLEKRQY
SERPPRYEYVLTDCGRDFRPVLLALLAWGNRNFAPEGPSVQIVDRETGKVVEPMLVDTENGEPLQMGRRHVLRAGPAADE
STRARLSSATSHMTTAAPTAPAAPLAQEAGKVA

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 21728; Mature: 21728

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSPNGPDDMQRKTFRNMQCPIARSLERVGEWWSILILRDAFYGTKRFDEFQRNLDIAPN
CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCHH
MLTRRLNGLVEEGLLEKRQYSERPPRYEYVLTDCGRDFRPVLLALLAWGNRNFAPEGPSV
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHCCCCHHHHHHHHHHHCCCCCCCCCCCE
QIVDRETGKVVEPMLVDTENGEPLQMGRRHVLRAGPAADESTRARLSSATSHMTTAAPTA
EEEECCCCCEECCEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCC
PAAPLAQEAGKVA
CCCHHHHHCCCCC
>Mature Secondary Structure
MFSPNGPDDMQRKTFRNMQCPIARSLERVGEWWSILILRDAFYGTKRFDEFQRNLDIAPN
CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCHH
MLTRRLNGLVEEGLLEKRQYSERPPRYEYVLTDCGRDFRPVLLALLAWGNRNFAPEGPSV
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHCCCCHHHHHHHHHHHCCCCCCCCCCCE
QIVDRETGKVVEPMLVDTENGEPLQMGRRHVLRAGPAADESTRARLSSATSHMTTAAPTA
EEEECCCCCEECCEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCC
PAAPLAQEAGKVA
CCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]