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The map label for this gene is yhjC [H]

Identifier: 94313468

GI number: 94313468

Start: 1149615

End: 1150529

Strand: Reverse

Name: yhjC [H]

Synonym: Rmet_4543

Alternate gene names: 94313468

Gene position: 1150529-1149615 (Counterclockwise)

Preceding gene: 94313470

Following gene: 94313467

Centisome position: 44.59

GC content: 63.83

Gene sequence:

>915_bases
ATGGACCGGATCGACGCCATGCGCGTGTTCACGCGAATCGTGGAGCGGCGCAGTTTCACCGCTGCGGCCAAGGACCTGGA
CTTGCCACGGTCGTCGGTGACCGACGCGGTCAAGCAACTGGAATCGCGGCTTGGCGTGCGATTACTGCAGCGGACGACAC
GCCACGTGAGCCCGACGCTCGACGGCGAAGCCTATTTCCAGCGCTGTCTGCGGCTGCTGGCGGATTTCGAGGAGGCAGAG
GCGGCATTCGCGGGCACTTCACCTAAAGGCGTGCTGCGGGTCGACGTGCAAGGGCAACTCGCGCGCCGCTTCCTGTTTCC
GGCCTTGCCGGCATTTCTGGCACAGCACCCGGGCATTACGCTGCAAATCAGCGAGGGCGATCGTTTGGTCGATCTCGTCC
GGGAGGGCATCGACTGCGTGCTCCGCGTTGGCGAACCGCAGGACAGCGAAATGGTGGCCAGACGCGTGGCCCGACTGGCG
CAACTCACGCTCGCCGCTCCCCCGTACCTTGCGCGGCATGGCAGTCCAGTGTCGATCGAGTCACTTGGCAACCACAGGAT
GGTCGGATTCCGCTCCACGCTAACCGGTGGCCTGCTGCCGCTCGAATTCATGACCGGTGGGGTACGCAGCGAGGTCATGC
TGCCGGCGCCGGTGTCGGTGAGCGGCGCGGAAAGCCTGGTGGCGGCATGTCGGCTCGGCCTCGGATTGATTCAGGTGCCG
CGCTACCACGTCGAGGAGGATTTGCTCCGAGGCACGTTGGTCAGCGTGTTGTCGGAAATTCCCCCACCGACGATGTCGGT
ATCGCTGCTGTATCCCCGGAGTCGTCAGTTGTCGCAGCGAGTGAGAGTGTTTCTCGACTGGGTTTCGGCGGAGTTCGCAA
AACATCGTGGAAAGAACGGCGTAGAAGTCGACTGA

Upstream 100 bases:

>100_bases
ATTTCCTCGAATGAACTGAATCGGTGAGGGAACGATAGACCTTACGCCATGCTAGATAAACAGGCAGAATTCGGCATCAA
TATTCGAAAATCCGAACAAT

Downstream 100 bases:

>100_bases
ACGGGCGATACTTGCCAGACATCAGTCAACCGCGCGTTGAAGCGAGTCCAGCAGACCTTGGCGTTTTCCCGTATTGTTGC
GACTTGGCGATAGTTGACGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MDRIDAMRVFTRIVERRSFTAAAKDLDLPRSSVTDAVKQLESRLGVRLLQRTTRHVSPTLDGEAYFQRCLRLLADFEEAE
AAFAGTSPKGVLRVDVQGQLARRFLFPALPAFLAQHPGITLQISEGDRLVDLVREGIDCVLRVGEPQDSEMVARRVARLA
QLTLAAPPYLARHGSPVSIESLGNHRMVGFRSTLTGGLLPLEFMTGGVRSEVMLPAPVSVSGAESLVAACRLGLGLIQVP
RYHVEEDLLRGTLVSVLSEIPPPTMSVSLLYPRSRQLSQRVRVFLDWVSAEFAKHRGKNGVEVD

Sequences:

>Translated_304_residues
MDRIDAMRVFTRIVERRSFTAAAKDLDLPRSSVTDAVKQLESRLGVRLLQRTTRHVSPTLDGEAYFQRCLRLLADFEEAE
AAFAGTSPKGVLRVDVQGQLARRFLFPALPAFLAQHPGITLQISEGDRLVDLVREGIDCVLRVGEPQDSEMVARRVARLA
QLTLAAPPYLARHGSPVSIESLGNHRMVGFRSTLTGGLLPLEFMTGGVRSEVMLPAPVSVSGAESLVAACRLGLGLIQVP
RYHVEEDLLRGTLVSVLSEIPPPTMSVSLLYPRSRQLSQRVRVFLDWVSAEFAKHRGKNGVEVD
>Mature_304_residues
MDRIDAMRVFTRIVERRSFTAAAKDLDLPRSSVTDAVKQLESRLGVRLLQRTTRHVSPTLDGEAYFQRCLRLLADFEEAE
AAFAGTSPKGVLRVDVQGQLARRFLFPALPAFLAQHPGITLQISEGDRLVDLVREGIDCVLRVGEPQDSEMVARRVARLA
QLTLAAPPYLARHGSPVSIESLGNHRMVGFRSTLTGGLLPLEFMTGGVRSEVMLPAPVSVSGAESLVAACRLGLGLIQVP
RYHVEEDLLRGTLVSVLSEIPPPTMSVSLLYPRSRQLSQRVRVFLDWVSAEFAKHRGKNGVEVD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=299, Percent_Identity=37.4581939799331, Blast_Score=197, Evalue=7e-52,
Organism=Escherichia coli, GI1786401, Length=288, Percent_Identity=31.25, Blast_Score=155, Evalue=2e-39,
Organism=Escherichia coli, GI1787589, Length=288, Percent_Identity=29.1666666666667, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1789639, Length=299, Percent_Identity=30.4347826086957, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI1787128, Length=287, Percent_Identity=28.5714285714286, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI87081978, Length=295, Percent_Identity=29.1525423728814, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1789440, Length=295, Percent_Identity=25.0847457627119, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1789173, Length=141, Percent_Identity=31.2056737588652, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788706, Length=213, Percent_Identity=23.943661971831, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1786448, Length=296, Percent_Identity=23.9864864864865, Blast_Score=72, Evalue=6e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33472; Mature: 33472

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRIDAMRVFTRIVERRSFTAAAKDLDLPRSSVTDAVKQLESRLGVRLLQRTTRHVSPTL
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DGEAYFQRCLRLLADFEEAEAAFAGTSPKGVLRVDVQGQLARRFLFPALPAFLAQHPGIT
CHHHHHHHHHHHHHCHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEE
LQISEGDRLVDLVREGIDCVLRVGEPQDSEMVARRVARLAQLTLAAPPYLARHGSPVSIE
EEECCCCHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHH
SLGNHRMVGFRSTLTGGLLPLEFMTGGVRSEVMLPAPVSVSGAESLVAACRLGLGLIQVP
HCCCCCEEEEHHHHHCCCEEHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCHHHCC
RYHVEEDLLRGTLVSVLSEIPPPTMSVSLLYPRSRQLSQRVRVFLDWVSAEFAKHRGKNG
CHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
VEVD
CCCC
>Mature Secondary Structure
MDRIDAMRVFTRIVERRSFTAAAKDLDLPRSSVTDAVKQLESRLGVRLLQRTTRHVSPTL
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DGEAYFQRCLRLLADFEEAEAAFAGTSPKGVLRVDVQGQLARRFLFPALPAFLAQHPGIT
CHHHHHHHHHHHHHCHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEE
LQISEGDRLVDLVREGIDCVLRVGEPQDSEMVARRVARLAQLTLAAPPYLARHGSPVSIE
EEECCCCHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHH
SLGNHRMVGFRSTLTGGLLPLEFMTGGVRSEVMLPAPVSVSGAESLVAACRLGLGLIQVP
HCCCCCEEEEHHHHHCCCEEHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCHHHCC
RYHVEEDLLRGTLVSVLSEIPPPTMSVSLLYPRSRQLSQRVRVFLDWVSAEFAKHRGKNG
CHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
VEVD
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]