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The map label for this gene is int [H]

Identifier: 94313439

GI number: 94313439

Start: 1117959

End: 1119638

Strand: Reverse

Name: int [H]

Synonym: Rmet_4514

Alternate gene names: 94313439

Gene position: 1119638-1117959 (Counterclockwise)

Preceding gene: 94313442

Following gene: 94313438

Centisome position: 43.4

GC content: 68.27

Gene sequence:

>1680_bases
ATGACGAATCGCCCGACCGCCACGCACATGGACTTTCCCGACGCCGCTGCCCTGGCCGCCCTGCGAGCCTGGCATGCGGG
ACTTTCCACGCGTGACGCGGTCTCTCGGTATCTGGACGATGCGCGGGCCACGGGCCAGTCCTCGCGCGGGATGGTGAGCA
AGATTCGCCGGCAGCTTGCCGCCTATGCGCGCTACCGGCTGCGTGAAGATCTTGCGCAATTGTTCGAATTCCCGGCCGCC
GAACGGGCGGCGAAGGGTAGGGAAGCAGACCACGCAATCGAAACACTCCGTGGCTTGCCGCCTCCAGCACCGGCGATTTC
CGACGATATCGGCCTGTGGCTGGCACCGACTGCCGTGGAGGCCCTGCGCGCTTGCGACATTCACACGCTGGCTGACCTCA
CTGTGCGAATCCCGCGCCGGCGCCAGTGGTGGCGCGGCATTTCCGGGCTGGGAGTGGCGGGCGCCAGGCGAATCGAGGCG
TTCTTCGCCGGCCATCCGCAACTCACGGCTCGCGCGCGGGCGCTAATCGAAGCCGAGCCGCGCGGCGTGATCGTGCCCTG
GGAGAAGATGGGGCGACTGCCGCATGAGGTGGACGGCTCGCTCGGCCAGTTCCGCGCGCCGCGCGAGACCTCCACGCTGA
ACGCGGACAACGACTACGCGGCTGTGCAAGCGTGGCTGGGGTTGCACGAATCGCCGTCTACGCTGCGTGCCTATCGCAAG
GAAGCCGAGAGGCTGATCCTCTGGGCGATCATCGAGCGCGGGCGGCCGCTGTCGTCGCTGACCACCGAGGACGCCACGGC
CTACCGGAACTTCCTGCGCCAACCCGCGCCGCGCGAACGCTGGGTAGGGCCCGCCCGGCCGCGTGGCGCCACGGATTGGA
AGCCGTTTGCTGACGGGCTGTCGCCACGCTCGGCAGCCTACAGCCTGCAGGTGCTTGGGGCGCTGTTTCGCTGGCTGGTG
CAGCAACGCTACGTGCTGGCCAACCCGTTCGCCGGCATCAAGGTGCGGGGCGGCGCCAAGACGGCCGCGCTCGATGTATC
GCACGCGTTCTCCGAAGGGGAATGGCTGCTGACGCGCAGCATCGCGGATGGCCTGGAGTGGTCATACGGCTGGGAAGCCT
CCGCCGCCCAACGGCTGCGCTTTATCCTGGATTTCACATACGCGACGGGACTGCGGGCGAGCGAACTGGTCGGCGCCACG
CTGCGCAATGTCGAAACCGACGTGCACGGCGATCACTGGTTGCGGCTGGTGGGCAAGGGCGCGAAGGCGGGCAGGGTGGC
GCTGCCGACGATGGCCCGCAACGCGCTTGACCGCTATCTGGTTGAGCGGGGCTTGCCGGTGACACGCGCCCTCTGGGACC
CGACGACGCCGATCGTCGGCAATCTAGGTTCCGACGAAGCCGGCGGCATCACCGGCGCGCGATTGTGGATGGTGATCAAG
CGCTTCTTCGGCACCGCCGCCGACCAGCTCGAAGCCGAACGCCCGGCCACCGCCGAAAAGCTGCGCCGCGCCAGCCCACA
CTGGCTGCGCCATACGCACGCCACCCATGCGCTGGCGCGCGGCGCGGAACTGACCACGGTGCGAGACAACCTGCGCCATG
CGTCGGTCTCGACCACGTCACTGTATCTACATGGCGACGATGTGAAGCGTGCCAGGCAGATGGACGACGCGTTCCAGTGA

Upstream 100 bases:

>100_bases
CCTCCGACGCAGATCACCAGCCATGGGTTTGCTTCCATGATCAAGCTATTGCGATAAGAAAAGTTATCGCAATGGCATGG
GTAAATGTTAAGATTCCGCC

Downstream 100 bases:

>100_bases
CGGCTAACAGACACGTGCCGGCCATGTGACGGATGGCTCGAACGCGGACAGCGGTATTCCCAAGCCTGGCCCCCGGGGCA
TCGCCCAGATTGCATCAGAT

Product: Tyrosine-based site-specific recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 559; Mature: 558

Protein sequence:

>559_residues
MTNRPTATHMDFPDAAALAALRAWHAGLSTRDAVSRYLDDARATGQSSRGMVSKIRRQLAAYARYRLREDLAQLFEFPAA
ERAAKGREADHAIETLRGLPPPAPAISDDIGLWLAPTAVEALRACDIHTLADLTVRIPRRRQWWRGISGLGVAGARRIEA
FFAGHPQLTARARALIEAEPRGVIVPWEKMGRLPHEVDGSLGQFRAPRETSTLNADNDYAAVQAWLGLHESPSTLRAYRK
EAERLILWAIIERGRPLSSLTTEDATAYRNFLRQPAPRERWVGPARPRGATDWKPFADGLSPRSAAYSLQVLGALFRWLV
QQRYVLANPFAGIKVRGGAKTAALDVSHAFSEGEWLLTRSIADGLEWSYGWEASAAQRLRFILDFTYATGLRASELVGAT
LRNVETDVHGDHWLRLVGKGAKAGRVALPTMARNALDRYLVERGLPVTRALWDPTTPIVGNLGSDEAGGITGARLWMVIK
RFFGTAADQLEAERPATAEKLRRASPHWLRHTHATHALARGAELTTVRDNLRHASVSTTSLYLHGDDVKRARQMDDAFQ

Sequences:

>Translated_559_residues
MTNRPTATHMDFPDAAALAALRAWHAGLSTRDAVSRYLDDARATGQSSRGMVSKIRRQLAAYARYRLREDLAQLFEFPAA
ERAAKGREADHAIETLRGLPPPAPAISDDIGLWLAPTAVEALRACDIHTLADLTVRIPRRRQWWRGISGLGVAGARRIEA
FFAGHPQLTARARALIEAEPRGVIVPWEKMGRLPHEVDGSLGQFRAPRETSTLNADNDYAAVQAWLGLHESPSTLRAYRK
EAERLILWAIIERGRPLSSLTTEDATAYRNFLRQPAPRERWVGPARPRGATDWKPFADGLSPRSAAYSLQVLGALFRWLV
QQRYVLANPFAGIKVRGGAKTAALDVSHAFSEGEWLLTRSIADGLEWSYGWEASAAQRLRFILDFTYATGLRASELVGAT
LRNVETDVHGDHWLRLVGKGAKAGRVALPTMARNALDRYLVERGLPVTRALWDPTTPIVGNLGSDEAGGITGARLWMVIK
RFFGTAADQLEAERPATAEKLRRASPHWLRHTHATHALARGAELTTVRDNLRHASVSTTSLYLHGDDVKRARQMDDAFQ
>Mature_558_residues
TNRPTATHMDFPDAAALAALRAWHAGLSTRDAVSRYLDDARATGQSSRGMVSKIRRQLAAYARYRLREDLAQLFEFPAAE
RAAKGREADHAIETLRGLPPPAPAISDDIGLWLAPTAVEALRACDIHTLADLTVRIPRRRQWWRGISGLGVAGARRIEAF
FAGHPQLTARARALIEAEPRGVIVPWEKMGRLPHEVDGSLGQFRAPRETSTLNADNDYAAVQAWLGLHESPSTLRAYRKE
AERLILWAIIERGRPLSSLTTEDATAYRNFLRQPAPRERWVGPARPRGATDWKPFADGLSPRSAAYSLQVLGALFRWLVQ
QRYVLANPFAGIKVRGGAKTAALDVSHAFSEGEWLLTRSIADGLEWSYGWEASAAQRLRFILDFTYATGLRASELVGATL
RNVETDVHGDHWLRLVGKGAKAGRVALPTMARNALDRYLVERGLPVTRALWDPTTPIVGNLGSDEAGGITGARLWMVIKR
FFGTAADQLEAERPATAEKLRRASPHWLRHTHATHALARGAELTTVRDNLRHASVSTTSLYLHGDDVKRARQMDDAFQ

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=333, Percent_Identity=27.027027027027, Blast_Score=76, Evalue=6e-15,
Organism=Escherichia coli, GI1789261, Length=333, Percent_Identity=29.4294294294294, Blast_Score=75, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 61910; Mature: 61779

Theoretical pI: Translated: 10.56; Mature: 10.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNRPTATHMDFPDAAALAALRAWHAGLSTRDAVSRYLDDARATGQSSRGMVSKIRRQLA
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
AYARYRLREDLAQLFEFPAAERAAKGREADHAIETLRGLPPPAPAISDDIGLWLAPTAVE
HHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCEEECHHHHH
ALRACDIHTLADLTVRIPRRRQWWRGISGLGVAGARRIEAFFAGHPQLTARARALIEAEP
HHHHCCHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCC
RGVIVPWEKMGRLPHEVDGSLGQFRAPRETSTLNADNDYAAVQAWLGLHESPSTLRAYRK
CCEEECHHHHCCCCCHHCCCHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHH
EAERLILWAIIERGRPLSSLTTEDATAYRNFLRQPAPRERWVGPARPRGATDWKPFADGL
HHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCHHHCCC
SPRSAAYSLQVLGALFRWLVQQRYVLANPFAGIKVRGGAKTAALDVSHAFSEGEWLLTRS
CCHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCEEECCCCCEEEEEHHHHHCCCCEEEEHH
IADGLEWSYGWEASAAQRLRFILDFTYATGLRASELVGATLRNVETDVHGDHWLRLVGKG
HHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCC
AKAGRVALPTMARNALDRYLVERGLPVTRALWDPTTPIVGNLGSDEAGGITGARLWMVIK
CCCCCEECHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHCCCCCCCCCCCHHHHHHHHHH
RFFGTAADQLEAERPATAEKLRRASPHWLRHTHATHALARGAELTTVRDNLRHASVSTTS
HHHCCHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEE
LYLHGDDVKRARQMDDAFQ
EEEECCHHHHHHHHHHCCC
>Mature Secondary Structure 
TNRPTATHMDFPDAAALAALRAWHAGLSTRDAVSRYLDDARATGQSSRGMVSKIRRQLA
CCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
AYARYRLREDLAQLFEFPAAERAAKGREADHAIETLRGLPPPAPAISDDIGLWLAPTAVE
HHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCEEECHHHHH
ALRACDIHTLADLTVRIPRRRQWWRGISGLGVAGARRIEAFFAGHPQLTARARALIEAEP
HHHHCCHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCC
RGVIVPWEKMGRLPHEVDGSLGQFRAPRETSTLNADNDYAAVQAWLGLHESPSTLRAYRK
CCEEECHHHHCCCCCHHCCCHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHH
EAERLILWAIIERGRPLSSLTTEDATAYRNFLRQPAPRERWVGPARPRGATDWKPFADGL
HHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCHHHCCC
SPRSAAYSLQVLGALFRWLVQQRYVLANPFAGIKVRGGAKTAALDVSHAFSEGEWLLTRS
CCHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCEEECCCCCEEEEEHHHHHCCCCEEEEHH
IADGLEWSYGWEASAAQRLRFILDFTYATGLRASELVGATLRNVETDVHGDHWLRLVGKG
HHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCC
AKAGRVALPTMARNALDRYLVERGLPVTRALWDPTTPIVGNLGSDEAGGITGARLWMVIK
CCCCCEECHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHCCCCCCCCCCCHHHHHHHHHH
RFFGTAADQLEAERPATAEKLRRASPHWLRHTHATHALARGAELTTVRDNLRHASVSTTS
HHHCCHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEE
LYLHGDDVKRARQMDDAFQ
EEEECCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA