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The map label for this gene is cbbR3 [H]

Identifier: 94313290

GI number: 94313290

Start: 962478

End: 963428

Strand: Reverse

Name: cbbR3 [H]

Synonym: Rmet_4365

Alternate gene names: 94313290

Gene position: 963428-962478 (Counterclockwise)

Preceding gene: 94313296

Following gene: 94313289

Centisome position: 37.34

GC content: 61.41

Gene sequence:

>951_bases
ATGAAGAACGCGACGCTTCGCCAGCTGAAAGTGTTCGAAACAGTGGCCCGCCATCTGAGCTTCTCACGCGCGGCGGAGGA
GCTTCATCTCACGCAACCTGCTGTTTCCACACAGGTTCGACAGCTCGAACTCCATGTCGGCCTGCCCCTCTTCGAGCAGC
TTGGAAAGCGCATCTACCTGACGCCGGCCGGCACCGAGATGCTGCATTACAGCCGATGCATCATCCAGCAGTTCCGCGAG
GCCGAAGACGCGATGGCGCAGCTTAAGGGTATATCCGGGGGCCGCCTCAACGTCGCGGTTATCAGTGCCGGTGACTACTT
CTTCCCCCGCCTGCTGGCCGAGTTCATGAACCGGCACGAATCGGTCACGCTCAATCTTGCCGTGCACAATCGCGAGGAAC
TGCTGCATCAGCTAGCCGGCAACCTGACCGATCTGGCGGTGATGGTTCGCCCGCCGGAAGGCATGGATACGATCGCCGAA
GCATTCGCCCCCCACCCCTACGTGATTGTCGCCGCGCCGAACCATCCGCTGGTGGACCAGCGCAATATCCCGCTGGCTGA
CCTGGCCGAGGAAGCATTCGTCTCGCGCGAGAAAGGCTCGGACACCTGGAATTCGATGCAGGAAGGCTTCGCGGGCCGCT
TGTCGAACCTGCGCATCGCGATGGAGATCAAGAGCACCGAGACCATCAAGCAGGCGGTAATCGCGAACATGGGCATCGCC
TTCCTGTCAGCCCACACGGTGGGCCTGGAACTTCAGGCCGGCAAGCTGGCCGTGCTCGACATCCAGGGCTTCCCGGTGAT
GCTCAACTGGTACGTGGTGCACCGCAAAAACAAGCGCCTGCCACCCGTGGCCCTGGCATTCAAGCATTTCCTCATGGAAG
AAGGCGCCACGCTGATCCAGCAGATCACTGGCGTGGAGGGGCTGATTCGCCCGCGCGCCATCCATAAATGA

Upstream 100 bases:

>100_bases
GCATCTGTGGATTGATGCTACTTCAAACTTAGATCAGCACAGCATAAAGTTTTTTATTATGATCATTGACGATCATTTAT
AGATTGCAGGATATCGTGCG

Downstream 100 bases:

>100_bases
TTGCTTATGATTTTGCGATGAAACTTTAATTATCGTAAATCGATCGTCCCATCTAAGCTGCAGGCATCAAACCGGCATCA
AGCCGCCCCACCTGCCTTGC

Product: LysR-type transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MKNATLRQLKVFETVARHLSFSRAAEELHLTQPAVSTQVRQLELHVGLPLFEQLGKRIYLTPAGTEMLHYSRCIIQQFRE
AEDAMAQLKGISGGRLNVAVISAGDYFFPRLLAEFMNRHESVTLNLAVHNREELLHQLAGNLTDLAVMVRPPEGMDTIAE
AFAPHPYVIVAAPNHPLVDQRNIPLADLAEEAFVSREKGSDTWNSMQEGFAGRLSNLRIAMEIKSTETIKQAVIANMGIA
FLSAHTVGLELQAGKLAVLDIQGFPVMLNWYVVHRKNKRLPPVALAFKHFLMEEGATLIQQITGVEGLIRPRAIHK

Sequences:

>Translated_316_residues
MKNATLRQLKVFETVARHLSFSRAAEELHLTQPAVSTQVRQLELHVGLPLFEQLGKRIYLTPAGTEMLHYSRCIIQQFRE
AEDAMAQLKGISGGRLNVAVISAGDYFFPRLLAEFMNRHESVTLNLAVHNREELLHQLAGNLTDLAVMVRPPEGMDTIAE
AFAPHPYVIVAAPNHPLVDQRNIPLADLAEEAFVSREKGSDTWNSMQEGFAGRLSNLRIAMEIKSTETIKQAVIANMGIA
FLSAHTVGLELQAGKLAVLDIQGFPVMLNWYVVHRKNKRLPPVALAFKHFLMEEGATLIQQITGVEGLIRPRAIHK
>Mature_316_residues
MKNATLRQLKVFETVARHLSFSRAAEELHLTQPAVSTQVRQLELHVGLPLFEQLGKRIYLTPAGTEMLHYSRCIIQQFRE
AEDAMAQLKGISGGRLNVAVISAGDYFFPRLLAEFMNRHESVTLNLAVHNREELLHQLAGNLTDLAVMVRPPEGMDTIAE
AFAPHPYVIVAAPNHPLVDQRNIPLADLAEEAFVSREKGSDTWNSMQEGFAGRLSNLRIAMEIKSTETIKQAVIANMGIA
FLSAHTVGLELQAGKLAVLDIQGFPVMLNWYVVHRKNKRLPPVALAFKHFLMEEGATLIQQITGVEGLIRPRAIHK

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=288, Percent_Identity=28.4722222222222, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI157672245, Length=189, Percent_Identity=32.8042328042328, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI1790399, Length=247, Percent_Identity=25.5060728744939, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788748, Length=308, Percent_Identity=26.2987012987013, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1786401, Length=305, Percent_Identity=26.2295081967213, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI87082132, Length=296, Percent_Identity=25.6756756756757, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788887, Length=198, Percent_Identity=30.8080808080808, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787530, Length=246, Percent_Identity=23.9837398373984, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787879, Length=249, Percent_Identity=27.3092369477912, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI145693105, Length=244, Percent_Identity=22.5409836065574, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1789204, Length=261, Percent_Identity=24.904214559387, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1789173, Length=299, Percent_Identity=27.4247491638796, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI48994962, Length=158, Percent_Identity=31.0126582278481, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787601, Length=181, Percent_Identity=23.7569060773481, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI87081904, Length=198, Percent_Identity=27.7777777777778, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI145693193, Length=177, Percent_Identity=29.3785310734463, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790208, Length=241, Percent_Identity=23.6514522821577, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35218; Mature: 35218

Theoretical pI: Translated: 7.95; Mature: 7.95

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNATLRQLKVFETVARHLSFSRAAEELHLTQPAVSTQVRQLELHVGLPLFEQLGKRIYL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEECCCHHHHHCCCEEEE
TPAGTEMLHYSRCIIQQFREAEDAMAQLKGISGGRLNVAVISAGDYFFPRLLAEFMNRHE
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHCCCC
SVTLNLAVHNREELLHQLAGNLTDLAVMVRPPEGMDTIAEAFAPHPYVIVAAPNHPLVDQ
EEEEEEEECCHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHCCCCEEEEECCCCCCCCC
RNIPLADLAEEAFVSREKGSDTWNSMQEGFAGRLSNLRIAMEIKSTETIKQAVIANMGIA
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCEEEEEEECCHHHHHHHHHHHCCHH
FLSAHTVGLELQAGKLAVLDIQGFPVMLNWYVVHRKNKRLPPVALAFKHFLMEEGATLIQ
HHHHHEEEEEEECCCEEEEEECCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
QITGVEGLIRPRAIHK
HHHCHHHHCCCCCCCC
>Mature Secondary Structure
MKNATLRQLKVFETVARHLSFSRAAEELHLTQPAVSTQVRQLELHVGLPLFEQLGKRIYL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEECCCHHHHHCCCEEEE
TPAGTEMLHYSRCIIQQFREAEDAMAQLKGISGGRLNVAVISAGDYFFPRLLAEFMNRHE
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHCCCC
SVTLNLAVHNREELLHQLAGNLTDLAVMVRPPEGMDTIAEAFAPHPYVIVAAPNHPLVDQ
EEEEEEEECCHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHCCCCEEEEECCCCCCCCC
RNIPLADLAEEAFVSREKGSDTWNSMQEGFAGRLSNLRIAMEIKSTETIKQAVIANMGIA
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCEEEEEEECCHHHHHHHHHHHCCHH
FLSAHTVGLELQAGKLAVLDIQGFPVMLNWYVVHRKNKRLPPVALAFKHFLMEEGATLIQ
HHHHHEEEEEEECCCEEEEEECCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
QITGVEGLIRPRAIHK
HHHCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]