Click here to switch to the map view.

The map label for this gene is ycaC [H]

Identifier: 94313193

GI number: 94313193

Start: 857870

End: 858511

Strand: Direct

Name: ycaC [H]

Synonym: Rmet_4267

Alternate gene names: 94313193

Gene position: 857870-858511 (Clockwise)

Preceding gene: 94313191

Following gene: 94313194

Centisome position: 33.25

GC content: 58.72

Gene sequence:

>642_bases
ATGGCCAGCGAACCCATCCGCGATCCACTCAAAGACCATCTGCTTACACCGCAGAACGCAGCCTTCGTTGTCATTGACTA
TCAGCCAGTGCAGGTGAACTCGATTGCCTCGATGGACCGGCAACTGCTGATCAACAACATCGTTGGTTCGGCGAAGGCAG
CGATTGCTTACAAGCTGCCCATCATCCATTCGACTGTGAACGTGAAGACCGGCCTCAACAAGCCGCCCATTCCACAGCTC
GCAAAAGTGCTGAAGGACTATCCCACCTACGATCGCACGACCATCAATTCCTGGGAGGATGTCGAGTTCCGCGCAGCCGT
AAAGGCAACCGGCCGCAAGAAGCTCATCATGACTGCGCTGTGGACTGAAGCCTGCCTGACGTTCCCTGCGCTCGACGCGC
TGGCCGAAGGCTTCGAAGTCTATGTGGTGGTTGATGCAGTTGGCGGTACATCCGGAGCCGCGCATGAGGCAGCGCTGCGC
CGCATCGAGCAGGCCGGCGGAAAAATGATCAGCGTGGCCCAGCTGTTTTGCGAACTGCAGCGCGACTGGTCGCGCGCGGA
GACCGTACCCGCCTTCATCAACCTGTTTATCGAGACCGGTGGCACGGCCGGCATCCAGTTCTCATACGACCGCACCGAGT
AA

Upstream 100 bases:

>100_bases
CCGGTCTCACATATGCTGCAAGGGCTCGCAGCAACTCCATATGGACAAGTGGCACCCGTGCCGTATGGCGAGCGTTTACC
AATTCTTCTTGGAGGCTATT

Downstream 100 bases:

>100_bases
GTACTAGCAGGAGCCGCGGCTGAAGCGCCGCTCCGTTCCTGCATGTAGCCTCGACCCGTTGGCATGCGTCCGCGTGACTG
CCGCGAACAATGCCCTTCGC

Product: isochorismatase hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 212

Protein sequence:

>213_residues
MASEPIRDPLKDHLLTPQNAAFVVIDYQPVQVNSIASMDRQLLINNIVGSAKAAIAYKLPIIHSTVNVKTGLNKPPIPQL
AKVLKDYPTYDRTTINSWEDVEFRAAVKATGRKKLIMTALWTEACLTFPALDALAEGFEVYVVVDAVGGTSGAAHEAALR
RIEQAGGKMISVAQLFCELQRDWSRAETVPAFINLFIETGGTAGIQFSYDRTE

Sequences:

>Translated_213_residues
MASEPIRDPLKDHLLTPQNAAFVVIDYQPVQVNSIASMDRQLLINNIVGSAKAAIAYKLPIIHSTVNVKTGLNKPPIPQL
AKVLKDYPTYDRTTINSWEDVEFRAAVKATGRKKLIMTALWTEACLTFPALDALAEGFEVYVVVDAVGGTSGAAHEAALR
RIEQAGGKMISVAQLFCELQRDWSRAETVPAFINLFIETGGTAGIQFSYDRTE
>Mature_212_residues
ASEPIRDPLKDHLLTPQNAAFVVIDYQPVQVNSIASMDRQLLINNIVGSAKAAIAYKLPIIHSTVNVKTGLNKPPIPQLA
KVLKDYPTYDRTTINSWEDVEFRAAVKATGRKKLIMTALWTEACLTFPALDALAEGFEVYVVVDAVGGTSGAAHEAALRR
IEQAGGKMISVAQLFCELQRDWSRAETVPAFINLFIETGGTAGIQFSYDRTE

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787124, Length=170, Percent_Identity=36.4705882352941, Blast_Score=117, Evalue=6e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 23321; Mature: 23190

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASEPIRDPLKDHLLTPQNAAFVVIDYQPVQVNSIASMDRQLLINNIVGSAKAAIAYKLP
CCCCCCCCHHHHHCCCCCCCEEEEEECCCCEEHHHHHHHHHHHHHHHHCCHHHEEEEECC
IIHSTVNVKTGLNKPPIPQLAKVLKDYPTYDRTTINSWEDVEFRAAVKATGRKKLIMTAL
EEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH
WTEACLTFPALDALAEGFEVYVVVDAVGGTSGAAHEAALRRIEQAGGKMISVAQLFCELQ
HHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
RDWSRAETVPAFINLFIETGGTAGIQFSYDRTE
HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
>Mature Secondary Structure 
ASEPIRDPLKDHLLTPQNAAFVVIDYQPVQVNSIASMDRQLLINNIVGSAKAAIAYKLP
CCCCCCCHHHHHCCCCCCCEEEEEECCCCEEHHHHHHHHHHHHHHHHCCHHHEEEEECC
IIHSTVNVKTGLNKPPIPQLAKVLKDYPTYDRTTINSWEDVEFRAAVKATGRKKLIMTAL
EEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH
WTEACLTFPALDALAEGFEVYVVVDAVGGTSGAAHEAALRRIEQAGGKMISVAQLFCELQ
HHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
RDWSRAETVPAFINLFIETGGTAGIQFSYDRTE
HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3062312; 8905232; 9278503; 9782055 [H]