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The map label for this gene is omp [H]

Identifier: 94313166

GI number: 94313166

Start: 824700

End: 825833

Strand: Reverse

Name: omp [H]

Synonym: Rmet_4239

Alternate gene names: 94313166

Gene position: 825833-824700 (Counterclockwise)

Preceding gene: 94313167

Following gene: 94313165

Centisome position: 32.01

GC content: 57.67

Gene sequence:

>1134_bases
ATGCAACGTCACTTAACAAGTCAATCCATTCGCAATGTTTGTTTGTATAAGCCAATACCCAATATGGAGGAGAAAGTGAA
GTTGAAGAGAAAAAGCCTGGTTGTCGCCACAGTCAGTGCTATGTTCGCAGCGAGCGCCCAGGCACAGAGCAGTGTGACGT
TGTACGGTGTCGCCGACGCAGGCATCGAGTACGTCAGCCATGCGGGTCTGGACGGCACAGGTTCCGCCTATCGCGTTTCG
TCCGATAACACCTCAGGGTCACGCTGGGGTCTGCGGGGCAAGGAGGATCTGGGCGGCGGACTGAGTGCCGTCTTCGTGCT
CGAAAGTGGCTTCAGCATTGACACGGGTACCATGGCACAAGGTGGTCGATTGTTTGGCCGCCAGGCTTTCGTTGGTATCT
CCAGCCACCTGGGCCAGATCACACTTGGCCGCCAGAACAATACTCTTTTTGATCTGTTTGCCGGGCTCGATCCGCTGCGC
TACGCCACCTACTCGCTGCTTTCGCAGGATGCCCAGTTCGCAGGCCGTCCCGACAACAGTGTCAAGTACACCGGAAACTT
TGGCGCGCTGACCATCACGGGCCTGTACAGCGCAGGATACGATTCGAACATCGCTAACGGCACCGAGGTTCCCGGTTCCC
CACGGGTAGGCCAGGAGATGGGCGCAGGCGCATCCTATACGTCTGGAAACCTTGGCATGGCGATAGCTTATGACCAGCGC
CGTGGCACCTCGGTGCTGAATGCGAGCGCTGTCGAGCGTCGCTACGTGGCTAGCTTGATCTACACCACCGGCCCCTTCTC
GGCCGTTGCCGGATATCGGTACCTGCAGGGAGGCCTGACGCCGACGACCGGCATTCGGTCAAACTTGTACTGGGTAGGCG
GTGGATACGCGATCACGCCTGCTTTGAGGCTGAACCTTGGCGTGTACTACACGGATCGCCGCGATTCCCCAAGCGATTCG
GCGAGCTATGTGCTGCAGACCCAGTACGCGTTTTCCAAGCGAACGGATCTGTATGTGAACGCTTCGTACATGAACAACAA
GGGCAAGTCGAACCTCGGCGTTGTCACATCGACGACGGTTGCACCTGGTGTCAGCCAGACCGGCATTGTGGCTGGTGTCA
GACATATTTTCTGA

Upstream 100 bases:

>100_bases
CCGAGCCATCCCGTTTGGCAAGGCGAGCCCATTGATCTTCTGTTTCGCGGCGAATGCATAAGTTTCGTTGACATCTGTTC
GGAAAGCAGCGCTCCGTTCT

Downstream 100 bases:

>100_bases
CGCCGGATAGGCGACGGGTTCGATTGATCACTTGTCCGCGATTGTTGAGGGATCGCGGACGTTTTGACGAGCATCGCCAG
GGCTTCGGTGGTCGGCGTGA

Product: outer membrane porin

Products: NA

Alternate protein names: OMP32 [H]

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MQRHLTSQSIRNVCLYKPIPNMEEKVKLKRKSLVVATVSAMFAASAQAQSSVTLYGVADAGIEYVSHAGLDGTGSAYRVS
SDNTSGSRWGLRGKEDLGGGLSAVFVLESGFSIDTGTMAQGGRLFGRQAFVGISSHLGQITLGRQNNTLFDLFAGLDPLR
YATYSLLSQDAQFAGRPDNSVKYTGNFGALTITGLYSAGYDSNIANGTEVPGSPRVGQEMGAGASYTSGNLGMAIAYDQR
RGTSVLNASAVERRYVASLIYTTGPFSAVAGYRYLQGGLTPTTGIRSNLYWVGGGYAITPALRLNLGVYYTDRRDSPSDS
ASYVLQTQYAFSKRTDLYVNASYMNNKGKSNLGVVTSTTVAPGVSQTGIVAGVRHIF

Sequences:

>Translated_377_residues
MQRHLTSQSIRNVCLYKPIPNMEEKVKLKRKSLVVATVSAMFAASAQAQSSVTLYGVADAGIEYVSHAGLDGTGSAYRVS
SDNTSGSRWGLRGKEDLGGGLSAVFVLESGFSIDTGTMAQGGRLFGRQAFVGISSHLGQITLGRQNNTLFDLFAGLDPLR
YATYSLLSQDAQFAGRPDNSVKYTGNFGALTITGLYSAGYDSNIANGTEVPGSPRVGQEMGAGASYTSGNLGMAIAYDQR
RGTSVLNASAVERRYVASLIYTTGPFSAVAGYRYLQGGLTPTTGIRSNLYWVGGGYAITPALRLNLGVYYTDRRDSPSDS
ASYVLQTQYAFSKRTDLYVNASYMNNKGKSNLGVVTSTTVAPGVSQTGIVAGVRHIF
>Mature_377_residues
MQRHLTSQSIRNVCLYKPIPNMEEKVKLKRKSLVVATVSAMFAASAQAQSSVTLYGVADAGIEYVSHAGLDGTGSAYRVS
SDNTSGSRWGLRGKEDLGGGLSAVFVLESGFSIDTGTMAQGGRLFGRQAFVGISSHLGQITLGRQNNTLFDLFAGLDPLR
YATYSLLSQDAQFAGRPDNSVKYTGNFGALTITGLYSAGYDSNIANGTEVPGSPRVGQEMGAGASYTSGNLGMAIAYDQR
RGTSVLNASAVERRYVASLIYTTGPFSAVAGYRYLQGGLTPTTGIRSNLYWVGGGYAITPALRLNLGVYYTDRRDSPSDS
ASYVLQTQYAFSKRTDLYVNASYMNNKGKSNLGVVTSTTVAPGVSQTGIVAGVRHIF

Specific function: Forms anion selective channels [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To bacterial outer membrane proteins and porins [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001702
- InterPro:   IPR002299 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 40020; Mature: 40020

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRHLTSQSIRNVCLYKPIPNMEEKVKLKRKSLVVATVSAMFAASAQAQSSVTLYGVADA
CCCCCCHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHH
GIEYVSHAGLDGTGSAYRVSSDNTSGSRWGLRGKEDLGGGLSAVFVLESGFSIDTGTMAQ
HHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHCCCCEEEEEEEECCCCCCCCCCCC
GGRLFGRQAFVGISSHLGQITLGRQNNTLFDLFAGLDPLRYATYSLLSQDAQFAGRPDNS
CCEEECCHHEEEHHHCCCEEEECCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC
VKYTGNFGALTITGLYSAGYDSNIANGTEVPGSPRVGQEMGAGASYTSGNLGMAIAYDQR
EEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEEEECCC
RGTSVLNASAVERRYVASLIYTTGPFSAVAGYRYLQGGLTPTTGIRSNLYWVGGGYAITP
CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEECCEEECC
ALRLNLGVYYTDRRDSPSDSASYVLQTQYAFSKRTDLYVNASYMNNKGKSNLGVVTSTTV
EEEEEEEEEEECCCCCCCCCCEEEEEEEHHHCCCCEEEEEEHCCCCCCCCCCCEEEECCC
APGVSQTGIVAGVRHIF
CCCCCCCHHHHHHHHCC
>Mature Secondary Structure
MQRHLTSQSIRNVCLYKPIPNMEEKVKLKRKSLVVATVSAMFAASAQAQSSVTLYGVADA
CCCCCCHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHH
GIEYVSHAGLDGTGSAYRVSSDNTSGSRWGLRGKEDLGGGLSAVFVLESGFSIDTGTMAQ
HHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHCCCCEEEEEEEECCCCCCCCCCCC
GGRLFGRQAFVGISSHLGQITLGRQNNTLFDLFAGLDPLRYATYSLLSQDAQFAGRPDNS
CCEEECCHHEEEHHHCCCEEEECCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC
VKYTGNFGALTITGLYSAGYDSNIANGTEVPGSPRVGQEMGAGASYTSGNLGMAIAYDQR
EEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEEEECCC
RGTSVLNASAVERRYVASLIYTTGPFSAVAGYRYLQGGLTPTTGIRSNLYWVGGGYAITP
CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEECCEEECC
ALRLNLGVYYTDRRDSPSDSASYVLQTQYAFSKRTDLYVNASYMNNKGKSNLGVVTSTTV
EEEEEEEEEEECCCCCCCCCCEEEEEEEHHHCCCCEEEEEEHCCCCCCCCCCCEEEECCC
APGVSQTGIVAGVRHIF
CCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1848840 [H]