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The map label for this gene is yciR [C]

Identifier: 94313164

GI number: 94313164

Start: 822361

End: 823422

Strand: Reverse

Name: yciR [C]

Synonym: Rmet_4237

Alternate gene names: 94313164

Gene position: 823422-822361 (Counterclockwise)

Preceding gene: 94313165

Following gene: 94313158

Centisome position: 31.91

GC content: 61.3

Gene sequence:

>1062_bases
GTGACCACCCCGCCACCGTACATCGCCCGCAATCGGGTGACTGCATTGCTGCAAGACGGCGGGCTTGAAATGCACTACCA
GCCCATCGTCGGGCTCAAATCGGGCAATGTCATCAAGGTCGAGGCATTGGCTCGCCTTCGCGACGGCAACTGTCTGCTGA
TGCCGGGCGAGTTCTTGCCCGCCCTGTCAGGTGAAACGCTTCTTGAGCTTTATTCGAAGGGCCTGGAGCAGGCATTGCGA
CAGCGCACCGCATGGGTGCGCCAGGGAGTGACACTCGGGCTCTCTGTCAACCTGCCGCCTGAGGCGCTGGGCGATGACCG
CTACTACGAAGCGACGTGCGCAGCGCTGGTCGCGAGCCGGTGTCCGCCTGGCACGTTAACGCTCGAATTGCTTGAGAGCG
GCGAGGTGCCGGAGGGGAGCATTGCCATCGCGATGCGGAAGTTCAAGGCGCTGGGAGTTCAACTGGCGGAAGATGACCTC
GGTGCCGGCTACAGCAGCCTGACGAGGCTGCGTCAGTTTCCGTTCGACTGGATTAAGCTGGACCGCGGGATCGTCAGACT
TGCTGACGGTGACAAGACCGAAGCGCTGCGTTTCATTTTTCTACTGACGCGCCTCGGACACGGGCTTGGCAAGCAGGTCG
TGGTGGAGGGTGTGGAGTCCGCCGATTTGCTGGAGGCAGTCCGGTTGCTCGGCGTCGACGCCGCGCAAGGCTATGGTATC
GCCCGCCCCATGCCGGCCGGCGATGTTATGCCGTGGTTGCGCAAGCAAACTGAACGACGCGATTCCGGCCATCCGAGTAC
GTCGCTGGGCAGGCAGGCTTGCCTGCTCATGTTCGAGGAGCAGCTACACCTGATGGCAGGGAGCGTGTCGCGTGGCAACG
AACAGCCTCATAGGCGTATGGCATTGCAAGTTGATAACCTGAAAGCAGAACTGGATGCCATCTCCGATCCCAACAGTGAC
TGCGCGCGAGAGGCGAAGGCACTGCTTCATGCAGCGATATCACAGGGCATCAATAGCCCTGAGTATCGTCAGGCGCGCCG
GGATCTGGTGGCAATGATATGA

Upstream 100 bases:

>100_bases
ATCCGGGCCAGCTGGTTTCGACCGAGCATCGGGCCATGCCCCGGTCGATCAAGGTGATGTTTGACCTTGCACTTGAGCGC
GGCTCCGCGTCTTCGATGTC

Downstream 100 bases:

>100_bases
AGGTTGGCTTTCAGATGCCGGATAAAGGCGGCGCGGAATAGGATGGAGACCACGACACGCTCTGTCGTCCTTCAGCGTCT
TGATCACGCAGCGCAAGGCT

Product: diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 353; Mature: 352

Protein sequence:

>353_residues
MTTPPPYIARNRVTALLQDGGLEMHYQPIVGLKSGNVIKVEALARLRDGNCLLMPGEFLPALSGETLLELYSKGLEQALR
QRTAWVRQGVTLGLSVNLPPEALGDDRYYEATCAALVASRCPPGTLTLELLESGEVPEGSIAIAMRKFKALGVQLAEDDL
GAGYSSLTRLRQFPFDWIKLDRGIVRLADGDKTEALRFIFLLTRLGHGLGKQVVVEGVESADLLEAVRLLGVDAAQGYGI
ARPMPAGDVMPWLRKQTERRDSGHPSTSLGRQACLLMFEEQLHLMAGSVSRGNEQPHRRMALQVDNLKAELDAISDPNSD
CAREAKALLHAAISQGINSPEYRQARRDLVAMI

Sequences:

>Translated_353_residues
MTTPPPYIARNRVTALLQDGGLEMHYQPIVGLKSGNVIKVEALARLRDGNCLLMPGEFLPALSGETLLELYSKGLEQALR
QRTAWVRQGVTLGLSVNLPPEALGDDRYYEATCAALVASRCPPGTLTLELLESGEVPEGSIAIAMRKFKALGVQLAEDDL
GAGYSSLTRLRQFPFDWIKLDRGIVRLADGDKTEALRFIFLLTRLGHGLGKQVVVEGVESADLLEAVRLLGVDAAQGYGI
ARPMPAGDVMPWLRKQTERRDSGHPSTSLGRQACLLMFEEQLHLMAGSVSRGNEQPHRRMALQVDNLKAELDAISDPNSD
CAREAKALLHAAISQGINSPEYRQARRDLVAMI
>Mature_352_residues
TTPPPYIARNRVTALLQDGGLEMHYQPIVGLKSGNVIKVEALARLRDGNCLLMPGEFLPALSGETLLELYSKGLEQALRQ
RTAWVRQGVTLGLSVNLPPEALGDDRYYEATCAALVASRCPPGTLTLELLESGEVPEGSIAIAMRKFKALGVQLAEDDLG
AGYSSLTRLRQFPFDWIKLDRGIVRLADGDKTEALRFIFLLTRLGHGLGKQVVVEGVESADLLEAVRLLGVDAAQGYGIA
RPMPAGDVMPWLRKQTERRDSGHPSTSLGRQACLLMFEEQLHLMAGSVSRGNEQPHRRMALQVDNLKAELDAISDPNSDC
AREAKALLHAAISQGINSPEYRQARRDLVAMI

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=250, Percent_Identity=30.8, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI87081921, Length=243, Percent_Identity=29.6296296296296, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI226510982, Length=236, Percent_Identity=31.3559322033898, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1790496, Length=241, Percent_Identity=25.7261410788382, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87081743, Length=246, Percent_Identity=26.8292682926829, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1788502, Length=233, Percent_Identity=26.1802575107296, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788849, Length=249, Percent_Identity=28.1124497991968, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1787055, Length=245, Percent_Identity=26.1224489795918, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI87081980, Length=247, Percent_Identity=26.3157894736842, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI87082096, Length=245, Percent_Identity=27.3469387755102, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 38559; Mature: 38428

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTPPPYIARNRVTALLQDGGLEMHYQPIVGLKSGNVIKVEALARLRDGNCLLMPGEFLP
CCCCCCCHHHHHHHHHHHCCCCEEEECCEEEECCCCEEEEEHHHHHCCCCEEEECCHHCC
ALSGETLLELYSKGLEQALRQRTAWVRQGVTLGLSVNLPPEALGDDRYYEATCAALVASR
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHCCCCCHHHHHHHHHHHHC
CPPGTLTLELLESGEVPEGSIAIAMRKFKALGVQLAEDDLGAGYSSLTRLRQFPFDWIKL
CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCEEECHHHCCCHHHHHHHHHCCHHHHHH
DRGIVRLADGDKTEALRFIFLLTRLGHGLGKQVVVEGVESADLLEAVRLLGVDAAQGYGI
CCCEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCCCCC
ARPMPAGDVMPWLRKQTERRDSGHPSTSLGRQACLLMFEEQLHLMAGSVSRGNEQPHRRM
CCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
ALQVDNLKAELDAISDPNSDCAREAKALLHAAISQGINSPEYRQARRDLVAMI
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
TTPPPYIARNRVTALLQDGGLEMHYQPIVGLKSGNVIKVEALARLRDGNCLLMPGEFLP
CCCCCCHHHHHHHHHHHCCCCEEEECCEEEECCCCEEEEEHHHHHCCCCEEEECCHHCC
ALSGETLLELYSKGLEQALRQRTAWVRQGVTLGLSVNLPPEALGDDRYYEATCAALVASR
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHCCCCCHHHHHHHHHHHHC
CPPGTLTLELLESGEVPEGSIAIAMRKFKALGVQLAEDDLGAGYSSLTRLRQFPFDWIKL
CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCEEECHHHCCCHHHHHHHHHCCHHHHHH
DRGIVRLADGDKTEALRFIFLLTRLGHGLGKQVVVEGVESADLLEAVRLLGVDAAQGYGI
CCCEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCCCCC
ARPMPAGDVMPWLRKQTERRDSGHPSTSLGRQACLLMFEEQLHLMAGSVSRGNEQPHRRM
CCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
ALQVDNLKAELDAISDPNSDCAREAKALLHAAISQGINSPEYRQARRDLVAMI
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]