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The map label for this gene is ybjK [C]

Identifier: 94313115

GI number: 94313115

Start: 771505

End: 772140

Strand: Direct

Name: ybjK [C]

Synonym: Rmet_4188

Alternate gene names: 94313115

Gene position: 771505-772140 (Clockwise)

Preceding gene: 94313114

Following gene: 94313120

Centisome position: 29.9

GC content: 62.74

Gene sequence:

>636_bases
TTGTGTATCTATCTTCGTGTAGATAAAGTGGCGACCATGAAAACGCAACCTGTCCGCGAGCAACTGCTCGAACACACGCT
GATCCTGATCCGCCAACGCGGATGCAACGGCTTTAGCTATCGCGACCTGGCCGAGCTGGTGGGCGTCAAGACCTCCAGCA
TTCATTACTACTTCCCGTCGAAGGACGATCTGATCCTGGAAGCGGTCAAGGAGTACAGCCGGCGGATTAGCGAGCGGCTT
GCTGGCATCAGCGCCGACCTGCCCGTGCTGGACCAGGCGCGTCAGTACCTGGAGCCGTTGCGCCAGACCTGCGGGTCGAA
CCAGATTTGTCTGGCCGGGATGCTGTCGACCGAGATCCTGAGCCTGCCGGAGTCGGTGCACTCGGTGCTCAAGGACTTCT
ATCACGTCAACGAAAACTGGCTGGCGAAGCTGCTCGAGCGCGGCCAGAAAGAGCGTGACACGCCGTACCCGGTGCCGCCC
GCCATGCTGGCGCAGGTGATCTACGGGGCGCTGCAGAGCGGTCTGATTGCGGCGCGCCTGTTCGGCACGCAGGACCGTCT
GGAATCGGCGGCCGAAACGCTGCTTGGCGCGCTGTGCAACAAGCGCGCCGCGGCGCTGCTCGAAGCGCACGCCTGA

Upstream 100 bases:

>100_bases
GGATTCCCGGCGGCCGGAAAGTGGCGTGGCTTCGCAATCGCCACCTCCGTCGCGGGTTCCCGGCCTGAATGGCCGCTGGT
TGGCTCCGGGAAAATCCCGG

Downstream 100 bases:

>100_bases
GTCGCGTACCGAACTATCTGCAGGACACATCATCCGCCGGAGGGCATCAGCCGTCCGGCGGTATTTTTTTGTCCTGCTTC
CAGGCGGCCACTGTGTCGCA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator; Transcriptional Regulatory Protein; Transcriptional Regulator Protein; Regulatory Protein TetR; TetR/AcrR Family Transcriptional Regulator; HTH-Type Transcriptional Regulator; Transcriptional Regulator Protein TetR Family; Transcriptional Regulator Of TetR Family Protein; TetR-Family Transcriptional Regulator; HTH-Type Protein SlmA; TetR Family Regulatory Protein; Transcriptional Regulator Protein Tetr Family

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MCIYLRVDKVATMKTQPVREQLLEHTLILIRQRGCNGFSYRDLAELVGVKTSSIHYYFPSKDDLILEAVKEYSRRISERL
AGISADLPVLDQARQYLEPLRQTCGSNQICLAGMLSTEILSLPESVHSVLKDFYHVNENWLAKLLERGQKERDTPYPVPP
AMLAQVIYGALQSGLIAARLFGTQDRLESAAETLLGALCNKRAAALLEAHA

Sequences:

>Translated_211_residues
MCIYLRVDKVATMKTQPVREQLLEHTLILIRQRGCNGFSYRDLAELVGVKTSSIHYYFPSKDDLILEAVKEYSRRISERL
AGISADLPVLDQARQYLEPLRQTCGSNQICLAGMLSTEILSLPESVHSVLKDFYHVNENWLAKLLERGQKERDTPYPVPP
AMLAQVIYGALQSGLIAARLFGTQDRLESAAETLLGALCNKRAAALLEAHA
>Mature_211_residues
MCIYLRVDKVATMKTQPVREQLLEHTLILIRQRGCNGFSYRDLAELVGVKTSSIHYYFPSKDDLILEAVKEYSRRISERL
AGISADLPVLDQARQYLEPLRQTCGSNQICLAGMLSTEILSLPESVHSVLKDFYHVNENWLAKLLERGQKERDTPYPVPP
AMLAQVIYGALQSGLIAARLFGTQDRLESAAETLLGALCNKRAAALLEAHA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23616; Mature: 23616

Theoretical pI: Translated: 7.45; Mature: 7.45

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCIYLRVDKVATMKTQPVREQLLEHTLILIRQRGCNGFSYRDLAELVGVKTSSIHYYFPS
CEEEEEECCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCEEEECCC
KDDLILEAVKEYSRRISERLAGISADLPVLDQARQYLEPLRQTCGSNQICLAGMLSTEIL
CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHH
SLPESVHSVLKDFYHVNENWLAKLLERGQKERDTPYPVPPAMLAQVIYGALQSGLIAARL
HCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
FGTQDRLESAAETLLGALCNKRAAALLEAHA
HCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MCIYLRVDKVATMKTQPVREQLLEHTLILIRQRGCNGFSYRDLAELVGVKTSSIHYYFPS
CEEEEEECCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCEEEECCC
KDDLILEAVKEYSRRISERLAGISADLPVLDQARQYLEPLRQTCGSNQICLAGMLSTEIL
CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHH
SLPESVHSVLKDFYHVNENWLAKLLERGQKERDTPYPVPPAMLAQVIYGALQSGLIAARL
HCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
FGTQDRLESAAETLLGALCNKRAAALLEAHA
HCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA