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The map label for this gene is ycjC [C]

Identifier: 94313037

GI number: 94313037

Start: 682057

End: 682695

Strand: Direct

Name: ycjC [C]

Synonym: Rmet_4110

Alternate gene names: 94313037

Gene position: 682057-682695 (Clockwise)

Preceding gene: 94313034

Following gene: 94313038

Centisome position: 26.44

GC content: 62.6

Gene sequence:

>639_bases
ATGGATGCGCCGGTTCAGGCGCGCACAAACCTCGATTCCGGGATGAGCAAAAAGCAAAAAGTGGAACCCGTGGCGGCCGA
GCCGAGCATTGCCGAGCGGCTGGCCGAGCTGCGCAAACTCAACGGCCTGACGCTCGAAGAACTGGCGCAACGCGCGTCAC
TGACCAAGAGCTATCTGTCCAAGCTGGAGCGGGGACTGTCGTCGCCGACCATTGGCACTGTGCTCAAGCTGGCCGATGCG
CTGGGCGTGACGGTGGATCAGCTCATCACGCGGTCGTCGCGTGCCAACGAGATTCTTCACATCCGGGCGGCGGACCGGAT
TCCCTTCAGCCCGTCCACGGAGCGCCTTGGCTATACCTACGAGGCCATTGCGACCGAACGGCCCGACAAGGCGATGCAGC
CCTTCATCATGGTGCCGCCGTTCACGCTCGAGGAAGACCAGCCCATGGCGAGCCATGCGGGAGAGGAACTGATCTTCGTC
GTCTCGGGCGAAATGGAAGTCCTGTTCGACGACCGTACCGTGCGCATGAGCGCTGGCGATTCGCTGTATTTCAACGCTTC
CATTCCGCACCGGTCACGTTCGCTGGGGCGGATTCAGGCACAGGCCCTGGTGGTCGTCAGCGATCGCAAGAAGGCGTGA

Upstream 100 bases:

>100_bases
GGGGGCGTATTGGAAACAAGTGTGTCTAGCATGACACCAAAGTGTCCTTAGTGCAACCGAGTTGCCGGGTGGGTCCATCG
GGCCGTAAAATCGCGGACCG

Downstream 100 bases:

>100_bases
CGCGAGGGCGAACTCTCGCGGAGGCGGATTTTCGCTCCAGGCAACAACGGATCGCGTAGTTCGGCAATTCACTTGCCGCG
CCGGACCTCTGGCCCTATGA

Product: Xre/Cro/CI family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; XRE Family Transcriptional Regulator; Cro/CI Family Transcriptional Regulator; MerR Family Transcriptional Regulator; Transcriptional Regulator XRE Family With Cupin Sensor; Cupin 2 Conserved Barrel Domain Protein; Transcriptional Regulator MerR Family; Transcriptional Regulator Protein; Cupin Domain Protein; Transcriptional Regulatory Protein; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator Merr Family; Cupin 2 Domain-Containing Protein; Transcriptional Regulator Cro/CI Family; Transcriptional Regulator Xre Family; Helix-Turn-Helix Transcriptional Regulator PuuR; Transcriptional Regulator-Like Protein; Cupin 2 Conserved Barrel Domain-Containing Protein; Epoxidase; Cupin 2 Barrel Domain-Containing Protein; Regulatory Protein; Helix-Turn-Helix Domain Protein; Transcriptional Regulator XRE Family Protein; Helix-Turn-Helix Transcriptional Regulator; Helix-Turn-Helix Family Protein; Transcription Regulator Protein; Transcriptional Regulator HTH_3 Family; Transcriptional Regulator Cro/CI Family Protein; Transcription Regulator; XRE Family-Like Protein; HTH_3family Transcriptional Regulator; Cupin/Helix-Turn-Helix Domain-Containing Protein

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MDAPVQARTNLDSGMSKKQKVEPVAAEPSIAERLAELRKLNGLTLEELAQRASLTKSYLSKLERGLSSPTIGTVLKLADA
LGVTVDQLITRSSRANEILHIRAADRIPFSPSTERLGYTYEAIATERPDKAMQPFIMVPPFTLEEDQPMASHAGEELIFV
VSGEMEVLFDDRTVRMSAGDSLYFNASIPHRSRSLGRIQAQALVVVSDRKKA

Sequences:

>Translated_212_residues
MDAPVQARTNLDSGMSKKQKVEPVAAEPSIAERLAELRKLNGLTLEELAQRASLTKSYLSKLERGLSSPTIGTVLKLADA
LGVTVDQLITRSSRANEILHIRAADRIPFSPSTERLGYTYEAIATERPDKAMQPFIMVPPFTLEEDQPMASHAGEELIFV
VSGEMEVLFDDRTVRMSAGDSLYFNASIPHRSRSLGRIQAQALVVVSDRKKA
>Mature_212_residues
MDAPVQARTNLDSGMSKKQKVEPVAAEPSIAERLAELRKLNGLTLEELAQRASLTKSYLSKLERGLSSPTIGTVLKLADA
LGVTVDQLITRSSRANEILHIRAADRIPFSPSTERLGYTYEAIATERPDKAMQPFIMVPPFTLEEDQPMASHAGEELIFV
VSGEMEVLFDDRTVRMSAGDSLYFNASIPHRSRSLGRIQAQALVVVSDRKKA

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23324; Mature: 23324

Theoretical pI: Translated: 6.82; Mature: 6.82

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAPVQARTNLDSGMSKKQKVEPVAAEPSIAERLAELRKLNGLTLEELAQRASLTKSYLS
CCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
KLERGLSSPTIGTVLKLADALGVTVDQLITRSSRANEILHIRAADRIPFSPSTERLGYTY
HHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCEEH
EAIATERPDKAMQPFIMVPPFTLEEDQPMASHAGEELIFVVSGEMEVLFDDRTVRMSAGD
HHHHCCCCHHHCCCEEECCCCCCCCCCCHHHCCCCEEEEEEECCEEEEECCCEEEEECCC
SLYFNASIPHRSRSLGRIQAQALVVVSDRKKA
EEEEECCCCCCHHHHHHEEEEEEEEECCCCCC
>Mature Secondary Structure
MDAPVQARTNLDSGMSKKQKVEPVAAEPSIAERLAELRKLNGLTLEELAQRASLTKSYLS
CCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
KLERGLSSPTIGTVLKLADALGVTVDQLITRSSRANEILHIRAADRIPFSPSTERLGYTY
HHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCEEH
EAIATERPDKAMQPFIMVPPFTLEEDQPMASHAGEELIFVVSGEMEVLFDDRTVRMSAGD
HHHHCCCCHHHCCCEEECCCCCCCCCCCHHHCCCCEEEEEEECCEEEEECCCEEEEECCC
SLYFNASIPHRSRSLGRIQAQALVVVSDRKKA
EEEEECCCCCCHHHHHHEEEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA