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The map label for this gene is yfdE [H]

Identifier: 94312999

GI number: 94312999

Start: 639138

End: 640313

Strand: Direct

Name: yfdE [H]

Synonym: Rmet_4071

Alternate gene names: 94312999

Gene position: 639138-640313 (Clockwise)

Preceding gene: 94312994

Following gene: 94313000

Centisome position: 24.77

GC content: 66.16

Gene sequence:

>1176_bases
ATGCTGCCTCTGTCCGGCATCCGCGTGGTGGATCTGTCGACCGTGGTGATGGGTCCTTACGCCAGCCAGTGGTTGGCCGA
TCTTGGCGCGGAAGTCATCAAGGTGGAGACACCCGAAGGTGACTCCACGCGCCGAACCGGCCCGGCGACCGAAGACGGCA
TGTCCGCGATCTTCCTGGGCGTGAACCGCAGCAAGAAGAGCGTGGTGCTGAACCTGAAGCGCCCGGAGGCGCAGGCGGCG
CTGCACCGGCTGCTGGCGTCAGCCGATGTCTTCGTCCACAGCATGCGGCCGCAGAAGCTGGCGAAGCTGGACCTCGATCC
TGCCAGCGTCATGGCGCGTCATCCGCAACTAATCTTCGTGAGCCTGCTCGGTTTCGCCGAGGACGGCCCGTACGGTGGCC
GTCCCGCGTATGACGACATCATCCAGGGCCTGTGCGGCAATGCGGCGCTGATGGCCGCGCAGACCGGCACCGTGCGTTAC
TTCCCGACCATCTCGGCGGACAAGACCAGTGGTCTGGTGGCCGCGCTGTCGATCTCGGCCGCGATTGCGGGCCGTGAGCG
GCAAGGCGGAAAGGGCTCGATGGTCGAAGTGCCGATGTTCGAATCGATGGTGGCCTTCAATATGGTCGAGCATCTGTACG
GGCAGCACTTCGAGCCGCCGCGTGGGCCGTCCGGCTATCCGCGCGTGCTGGCGCCGCTGCGCCGGCCATACCAGACCGCG
GACGGCTACGTCTGCATGATGCCGTACACCGACGCGCACTGGCGTGACTTCTTCCAGGCGTCGGGGCGCGAGGACCTGGT
TGCCGATGCGCGTTTCACCGATATCGCCGCCCGCACGCGCCATATCGAAACGCTCTATGAAATCACTGGCGAACTCGTGC
GCGCGCGCAGCACCGCGGACTGGCTGGCTATCTGCGAGCGGCTGCAGATTCCGGTGGCCCGCGTGAACGACCTTCACGAA
CTCGTTGACGATCCGCACCTGCGCGCGACCGGCTTCTTCGACCAGATCGAAGATCCGTCGATGGGCACGCTGCGCTTTCC
CGGCGCGCCAGTGCGCTTCGATGGCGAACGCGCGCGCGCGGCCGTGCCGCCCAGGCTTGGCGAGCATACGCGCGAGATCC
TTGCCGCCGCAGGACTTGGCGACGACGAGATCGACCGGTTGCAATCGAATCAGTAG

Upstream 100 bases:

>100_bases
TGAATATCGGTTGCTAAAAATCTAATATTAGACGCAATGGGGCTGGCTGCCTTAATCTTGGCCGATCAATACATCGAATC
AATACAACAGGAGACACGGT

Downstream 100 bases:

>100_bases
GCCTGCATCCATCACCGAATTCCCGAGGAGACACCATGACGACTTCACAACCGCAACGCCTGGGCCAGGGCTTCTACTGG
CAGGACATCCGCGAAGGGCA

Product: putative formyl-CoA transferases/L-carnitine dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 391

Protein sequence:

>391_residues
MLPLSGIRVVDLSTVVMGPYASQWLADLGAEVIKVETPEGDSTRRTGPATEDGMSAIFLGVNRSKKSVVLNLKRPEAQAA
LHRLLASADVFVHSMRPQKLAKLDLDPASVMARHPQLIFVSLLGFAEDGPYGGRPAYDDIIQGLCGNAALMAAQTGTVRY
FPTISADKTSGLVAALSISAAIAGRERQGGKGSMVEVPMFESMVAFNMVEHLYGQHFEPPRGPSGYPRVLAPLRRPYQTA
DGYVCMMPYTDAHWRDFFQASGREDLVADARFTDIAARTRHIETLYEITGELVRARSTADWLAICERLQIPVARVNDLHE
LVDDPHLRATGFFDQIEDPSMGTLRFPGAPVRFDGERARAAVPPRLGEHTREILAAAGLGDDEIDRLQSNQ

Sequences:

>Translated_391_residues
MLPLSGIRVVDLSTVVMGPYASQWLADLGAEVIKVETPEGDSTRRTGPATEDGMSAIFLGVNRSKKSVVLNLKRPEAQAA
LHRLLASADVFVHSMRPQKLAKLDLDPASVMARHPQLIFVSLLGFAEDGPYGGRPAYDDIIQGLCGNAALMAAQTGTVRY
FPTISADKTSGLVAALSISAAIAGRERQGGKGSMVEVPMFESMVAFNMVEHLYGQHFEPPRGPSGYPRVLAPLRRPYQTA
DGYVCMMPYTDAHWRDFFQASGREDLVADARFTDIAARTRHIETLYEITGELVRARSTADWLAICERLQIPVARVNDLHE
LVDDPHLRATGFFDQIEDPSMGTLRFPGAPVRFDGERARAAVPPRLGEHTREILAAAGLGDDEIDRLQSNQ
>Mature_391_residues
MLPLSGIRVVDLSTVVMGPYASQWLADLGAEVIKVETPEGDSTRRTGPATEDGMSAIFLGVNRSKKSVVLNLKRPEAQAA
LHRLLASADVFVHSMRPQKLAKLDLDPASVMARHPQLIFVSLLGFAEDGPYGGRPAYDDIIQGLCGNAALMAAQTGTVRY
FPTISADKTSGLVAALSISAAIAGRERQGGKGSMVEVPMFESMVAFNMVEHLYGQHFEPPRGPSGYPRVLAPLRRPYQTA
DGYVCMMPYTDAHWRDFFQASGREDLVADARFTDIAARTRHIETLYEITGELVRARSTADWLAICERLQIPVARVNDLHE
LVDDPHLRATGFFDQIEDPSMGTLRFPGAPVRFDGERARAAVPPRLGEHTREILAAAGLGDDEIDRLQSNQ

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=388, Percent_Identity=29.3814432989691, Blast_Score=172, Evalue=6e-43,
Organism=Homo sapiens, GI300863124, Length=414, Percent_Identity=28.743961352657, Blast_Score=160, Evalue=2e-39,
Organism=Homo sapiens, GI300863126, Length=385, Percent_Identity=27.7922077922078, Blast_Score=150, Evalue=2e-36,
Organism=Homo sapiens, GI13376042, Length=414, Percent_Identity=26.5700483091787, Blast_Score=128, Evalue=9e-30,
Organism=Homo sapiens, GI42794625, Length=407, Percent_Identity=26.7813267813268, Blast_Score=103, Evalue=4e-22,
Organism=Homo sapiens, GI266456254, Length=407, Percent_Identity=26.7813267813268, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI266458397, Length=249, Percent_Identity=31.3253012048193, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI266458393, Length=249, Percent_Identity=31.3253012048193, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI266458395, Length=132, Percent_Identity=34.0909090909091, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI42822893, Length=171, Percent_Identity=30.9941520467836, Blast_Score=76, Evalue=7e-14,
Organism=Escherichia coli, GI87082093, Length=362, Percent_Identity=29.8342541436464, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1788717, Length=419, Percent_Identity=27.9236276849642, Blast_Score=144, Evalue=8e-36,
Organism=Escherichia coli, GI1786222, Length=405, Percent_Identity=26.9135802469136, Blast_Score=94, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI32564160, Length=326, Percent_Identity=26.6871165644172, Blast_Score=89, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI115535051, Length=323, Percent_Identity=25.6965944272446, Blast_Score=86, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24648431, Length=398, Percent_Identity=31.4070351758794, Blast_Score=184, Evalue=1e-46,
Organism=Drosophila melanogaster, GI24585488, Length=201, Percent_Identity=29.8507462686567, Blast_Score=94, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42752; Mature: 42752

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPLSGIRVVDLSTVVMGPYASQWLADLGAEVIKVETPEGDSTRRTGPATEDGMSAIFLG
CCCCCCEEEEEEHHEEECCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEE
VNRSKKSVVLNLKRPEAQAALHRLLASADVFVHSMRPQKLAKLDLDPASVMARHPQLIFV
CCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHCCCCEEEH
SLLGFAEDGPYGGRPAYDDIIQGLCGNAALMAAQTGTVRYFPTISADKTSGLVAALSISA
HHHHHCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCEEEEECCCCCCCCCEEHHHHHHH
AIAGRERQGGKGSMVEVPMFESMVAFNMVEHLYGQHFEPPRGPSGYPRVLAPLRRPYQTA
HHCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCC
DGYVCMMPYTDAHWRDFFQASGREDLVADARFTDIAARTRHIETLYEITGELVRARSTAD
CCEEEEECCCCHHHHHHHHCCCCCHHECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
WLAICERLQIPVARVNDLHELVDDPHLRATGFFDQIEDPSMGTLRFPGAPVRFDGERARA
HHHHHHHHCCCHHHHHHHHHHHCCCCCEECCCHHHCCCCCCCEEECCCCCEEECCCCCCC
AVPPRLGEHTREILAAAGLGDDEIDRLQSNQ
CCCCCHHHHHHHHHHHCCCCHHHHHHHCCCC
>Mature Secondary Structure
MLPLSGIRVVDLSTVVMGPYASQWLADLGAEVIKVETPEGDSTRRTGPATEDGMSAIFLG
CCCCCCEEEEEEHHEEECCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEE
VNRSKKSVVLNLKRPEAQAALHRLLASADVFVHSMRPQKLAKLDLDPASVMARHPQLIFV
CCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHCCCCEEEH
SLLGFAEDGPYGGRPAYDDIIQGLCGNAALMAAQTGTVRYFPTISADKTSGLVAALSISA
HHHHHCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCEEEEECCCCCCCCCEEHHHHHHH
AIAGRERQGGKGSMVEVPMFESMVAFNMVEHLYGQHFEPPRGPSGYPRVLAPLRRPYQTA
HHCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCC
DGYVCMMPYTDAHWRDFFQASGREDLVADARFTDIAARTRHIETLYEITGELVRARSTAD
CCEEEEECCCCHHHHHHHHCCCCCHHECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
WLAICERLQIPVARVNDLHELVDDPHLRATGFFDQIEDPSMGTLRFPGAPVRFDGERARA
HHHHHHHHCCCHHHHHHHHHHHCCCCCEECCCHHHCCCCCCCEEECCCCCEEECCCCCCC
AVPPRLGEHTREILAAAGLGDDEIDRLQSNQ
CCCCCHHHHHHHHHHHCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]