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The map label for this gene is rcsB [H]

Identifier: 94312914

GI number: 94312914

Start: 555473

End: 556126

Strand: Reverse

Name: rcsB [H]

Synonym: Rmet_3986

Alternate gene names: 94312914

Gene position: 556126-555473 (Counterclockwise)

Preceding gene: 94312915

Following gene: 94312913

Centisome position: 21.55

GC content: 59.94

Gene sequence:

>654_bases
ATGATTGCGAAAACCATTCGGGTGGCGCTGGCGGATGATCATCCGCTCGTCGTTGTCGCTTTGCGAGATTGCTTGCAGCG
TACTCCGGGCTTCCAGGTGACATGTGAATGCACCAACGGCAGTGAACTGGTCGACGCCTTGACGCAGAATCCGGTCGACG
TTGCCGTCACCGACTTCAGCATGGGGCATGGCGATACGTCGCTGGACGGATTCAATCTGTTGCGCAAACTGCACAGACGC
CATCCGGACACGCGTATCGTGGTGGTCAGCGCCCAGACGAATCCTGGTGTGGTCAGCCGCGCGATGAAGCTCGGCGCGCG
TGCGTTCGTCAGCAAAGAAGACGAACTCGACGAAATCGTGCGCGCCTGTATCCATGTCACCGTCAGCAACGGCCACTTCT
ATTCGCCGTCGATTCGGGCGGTGCTGGACAGCGCCACCGCGGCGGCCACAGCCGCCCCCGCCACGGATCTGACATTGCGT
GAGCTCGATGTCGTGCGGCTCTATGCGCAGGGCTTCCAGCTCACCGAGATCGCCAACAAGCTCGGGCGGTCGGTGAGCAC
GATCTCCAGTCAGAAAACCGTTGCCATGCGCAAGCTGAGCGTCCAAACCAATACGGACCTTATCCGCTATGCCTATGAAA
ACGGTCTGATCTGA

Upstream 100 bases:

>100_bases
ATACGATATAGAGTGCATTCCCTAATTTTCAGATAGCTAAACCCTCTCACGCAGCGCGTTCGCCAGAATGCGTTGCCTGG
CTGCGAAAGGACATTGATGC

Downstream 100 bases:

>100_bases
TCCTTCAAATGCAGCAAGTTCTCGATCGCACTCAGGAGTCGCTGGCGCAGGCGTTTGCTTCCCTGGCGCGCAACGCAAGA
CGGCAGCGTCAGCTCTACTA

Product: LuxR family two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MIAKTIRVALADDHPLVVVALRDCLQRTPGFQVTCECTNGSELVDALTQNPVDVAVTDFSMGHGDTSLDGFNLLRKLHRR
HPDTRIVVVSAQTNPGVVSRAMKLGARAFVSKEDELDEIVRACIHVTVSNGHFYSPSIRAVLDSATAAATAAPATDLTLR
ELDVVRLYAQGFQLTEIANKLGRSVSTISSQKTVAMRKLSVQTNTDLIRYAYENGLI

Sequences:

>Translated_217_residues
MIAKTIRVALADDHPLVVVALRDCLQRTPGFQVTCECTNGSELVDALTQNPVDVAVTDFSMGHGDTSLDGFNLLRKLHRR
HPDTRIVVVSAQTNPGVVSRAMKLGARAFVSKEDELDEIVRACIHVTVSNGHFYSPSIRAVLDSATAAATAAPATDLTLR
ELDVVRLYAQGFQLTEIANKLGRSVSTISSQKTVAMRKLSVQTNTDLIRYAYENGLI
>Mature_217_residues
MIAKTIRVALADDHPLVVVALRDCLQRTPGFQVTCECTNGSELVDALTQNPVDVAVTDFSMGHGDTSLDGFNLLRKLHRR
HPDTRIVVVSAQTNPGVVSRAMKLGARAFVSKEDELDEIVRACIHVTVSNGHFYSPSIRAVLDSATAAATAAPATDLTLR
ELDVVRLYAQGFQLTEIANKLGRSVSTISSQKTVAMRKLSVQTNTDLIRYAYENGLI

Specific function: Also stimulates ftsZ expression. This suggests that rcsB is a regulator implicated in the regulation of more than one cellular function [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788546, Length=207, Percent_Identity=32.8502415458937, Blast_Score=117, Evalue=8e-28,
Organism=Escherichia coli, GI1790102, Length=209, Percent_Identity=31.1004784688995, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1788222, Length=213, Percent_Identity=28.169014084507, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI1786747, Length=212, Percent_Identity=25.9433962264151, Blast_Score=84, Evalue=5e-18,
Organism=Escherichia coli, GI1788712, Length=208, Percent_Identity=26.9230769230769, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1788521, Length=202, Percent_Identity=27.7227722772277, Blast_Score=70, Evalue=8e-14,
Organism=Escherichia coli, GI1787473, Length=184, Percent_Identity=27.7173913043478, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23577; Mature: 23577

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAKTIRVALADDHPLVVVALRDCLQRTPGFQVTCECTNGSELVDALTQNPVDVAVTDFS
CCCCEEEEEEECCCCEEEEHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCEEEEEEEE
MGHGDTSLDGFNLLRKLHRRHPDTRIVVVSAQTNPGVVSRAMKLGARAFVSKEDELDEIV
CCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHH
RACIHVTVSNGHFYSPSIRAVLDSATAAATAAPATDLTLRELDVVRLYAQGFQLTEIANK
HHHHEEEECCCEEECCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHH
LGRSVSTISSQKTVAMRKLSVQTNTDLIRYAYENGLI
HCCHHHHHHHHHHHHHHHEECCCCCHHHEEHHHCCCC
>Mature Secondary Structure
MIAKTIRVALADDHPLVVVALRDCLQRTPGFQVTCECTNGSELVDALTQNPVDVAVTDFS
CCCCEEEEEEECCCCEEEEHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCEEEEEEEE
MGHGDTSLDGFNLLRKLHRRHPDTRIVVVSAQTNPGVVSRAMKLGARAFVSKEDELDEIV
CCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHH
RACIHVTVSNGHFYSPSIRAVLDSATAAATAAPATDLTLRELDVVRLYAQGFQLTEIANK
HHHHEEEECCCEEECCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHH
LGRSVSTISSQKTVAMRKLSVQTNTDLIRYAYENGLI
HCCHHHHHHHHHHHHHHHEECCCCCHHHEEHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]