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The map label for this gene is pobR [H]

Identifier: 94312909

GI number: 94312909

Start: 547611

End: 548453

Strand: Direct

Name: pobR [H]

Synonym: Rmet_3981

Alternate gene names: 94312909

Gene position: 547611-548453 (Clockwise)

Preceding gene: 94312903

Following gene: 94312910

Centisome position: 21.22

GC content: 67.02

Gene sequence:

>843_bases
ATGAAGCGCACAACCTCGATTCCGATGCCCGCCGATACCGCCCTGGTATCGGCCGATGCCGCGCGTCCCGCCGAGGACGG
GGATCGGAATTTTGTGACGGCGCTGGCCCGCGGCGTGGAGTTGCTGCGTGCGTTCGGGCCGGACGATGACTTCCTTGGCA
ATGCGGAGTTGTCGCGTCGTACCGGCATCCCCCGACCAACGGTTTCGCGTCTGACGTACACACTGGCCAGTCTCGGATAC
CTCGTGTACGTCGAGGCCCAGGAGAAGTACCGTATTGGCCAGGCGGCGATGCTGCCCGCGCAGCGCTATCTCTCGGGGGC
CGGCATTCGCGATATCGCGCAGCCGCTGATGCAGTCTCTGGCGTTTGCCACTGGCTGCACGGTGGCGCTGGCGGCGCCGG
ATCGTCACGACATGGTGTATCTCGAGGTGTGCCAGCCGCGTGGTGCGTTGGTGATGAGGCTCACGCCTGGCTCGCGGCTG
CCGATGGCGACATCGGCCATCGGCAAGGCGTGGCTGGCGGGCCTGACATCCGATCGGCGAGGCGCGGTGTTCGCCGAACT
CGAGCGTCACCATGGGGCGCGTTGGGCATCCATCCGTACCAAGCTTGAGCGTGGACTGCGCGAACACGCGCGACGCGGCT
TCTGCATGGCGCACGCCGAGTGGGACCGTTCGGTGAGTGGCGCCGCCGCGCCGGTGAGTCTGGCGGATGGCTCGGAAGTG
CTGTCGATCAACATCGGCGGGGCGTCCACGCGGCTCTCGCCCGAAATTCTTGAAGGCAATCTTGGCCCCCGCATTCGCGA
GTTGGCGGACGCGCTCGCGGCAAGACTCTGGCGGCCAGGCTGA

Upstream 100 bases:

>100_bases
GGCCTCCGGGCGGGCCTTGCCTTACTTGCCGTGTGTATGACCTCTATTCTTTCCGCACATAGCGCGGTCGTTCCTTGCCG
GAAACTGATATGAAGTCGAA

Downstream 100 bases:

>100_bases
TCTTATTCAACGCAGACATCGAACCTTGGAGGCATGCATGGAAGTTCGCAACAAGACCGTAATCGTGACCGGTGGTGGCA
CCGGTATTGGACGCGCCCTG

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MKRTTSIPMPADTALVSADAARPAEDGDRNFVTALARGVELLRAFGPDDDFLGNAELSRRTGIPRPTVSRLTYTLASLGY
LVYVEAQEKYRIGQAAMLPAQRYLSGAGIRDIAQPLMQSLAFATGCTVALAAPDRHDMVYLEVCQPRGALVMRLTPGSRL
PMATSAIGKAWLAGLTSDRRGAVFAELERHHGARWASIRTKLERGLREHARRGFCMAHAEWDRSVSGAAAPVSLADGSEV
LSINIGGASTRLSPEILEGNLGPRIRELADALAARLWRPG

Sequences:

>Translated_280_residues
MKRTTSIPMPADTALVSADAARPAEDGDRNFVTALARGVELLRAFGPDDDFLGNAELSRRTGIPRPTVSRLTYTLASLGY
LVYVEAQEKYRIGQAAMLPAQRYLSGAGIRDIAQPLMQSLAFATGCTVALAAPDRHDMVYLEVCQPRGALVMRLTPGSRL
PMATSAIGKAWLAGLTSDRRGAVFAELERHHGARWASIRTKLERGLREHARRGFCMAHAEWDRSVSGAAAPVSLADGSEV
LSINIGGASTRLSPEILEGNLGPRIRELADALAARLWRPG
>Mature_280_residues
MKRTTSIPMPADTALVSADAARPAEDGDRNFVTALARGVELLRAFGPDDDFLGNAELSRRTGIPRPTVSRLTYTLASLGY
LVYVEAQEKYRIGQAAMLPAQRYLSGAGIRDIAQPLMQSLAFATGCTVALAAPDRHDMVYLEVCQPRGALVMRLTPGSRL
PMATSAIGKAWLAGLTSDRRGAVFAELERHHGARWASIRTKLERGLREHARRGFCMAHAEWDRSVSGAAAPVSLADGSEV
LSINIGGASTRLSPEILEGNLGPRIRELADALAARLWRPG

Specific function: Positive regulator of the pobA gene for p- hydroxybenzoate hydroxylase [H]

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI87082359, Length=174, Percent_Identity=28.735632183908, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1789999, Length=247, Percent_Identity=27.9352226720648, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012794
- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 30172; Mature: 30172

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRTTSIPMPADTALVSADAARPAEDGDRNFVTALARGVELLRAFGPDDDFLGNAELSRR
CCCCCCCCCCCCHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
TGIPRPTVSRLTYTLASLGYLVYVEAQEKYRIGQAAMLPAQRYLSGAGIRDIAQPLMQSL
CCCCCCHHHHHHHHHHHCCEEEEEECHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
AFATGCTVALAAPDRHDMVYLEVCQPRGALVMRLTPGSRLPMATSAIGKAWLAGLTSDRR
HHHHCCEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCC
GAVFAELERHHGARWASIRTKLERGLREHARRGFCMAHAEWDRSVSGAAAPVSLADGSEV
CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCEEECCCCEE
LSINIGGASTRLSPEILEGNLGPRIRELADALAARLWRPG
EEEEECCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKRTTSIPMPADTALVSADAARPAEDGDRNFVTALARGVELLRAFGPDDDFLGNAELSRR
CCCCCCCCCCCCHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
TGIPRPTVSRLTYTLASLGYLVYVEAQEKYRIGQAAMLPAQRYLSGAGIRDIAQPLMQSL
CCCCCCHHHHHHHHHHHCCEEEEEECHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
AFATGCTVALAAPDRHDMVYLEVCQPRGALVMRLTPGSRLPMATSAIGKAWLAGLTSDRR
HHHHCCEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCC
GAVFAELERHHGARWASIRTKLERGLREHARRGFCMAHAEWDRSVSGAAAPVSLADGSEV
CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCEEECCCCEE
LSINIGGASTRLSPEILEGNLGPRIRELADALAARLWRPG
EEEEECCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8331077 [H]