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The map label for this gene is ybeF [C]

Identifier: 94312868

GI number: 94312868

Start: 498603

End: 499556

Strand: Reverse

Name: ybeF [C]

Synonym: Rmet_3940

Alternate gene names: 94312868

Gene position: 499556-498603 (Counterclockwise)

Preceding gene: 291481500

Following gene: 94312867

Centisome position: 19.36

GC content: 62.05

Gene sequence:

>954_bases
ATGCGGCACGTCAGCACGAAGCTATTGCATGTTTTCGTTCTGCTTATGGAGTATCGCGACCTCAATGCGGTTGCGGCTTG
CACTCAAGGGCGCGTACCCACAGTGGCATATAGCCTGGCGCGATTGCGCGAAATCACCGGCGATGCCTTGTTCGTGAAAC
GAAATGGCGCGCTGGAACCCACGCCTCATGCGTTGCGACTCGAGCAGACCGCGCGTCAGATTCTGGCCAAATGGAATCAA
CTCGTGCAGCCAAGCGGGGAACATGCCGCCCAGGCAACCCGAGGCCGACGCATTTCGATCGGGTTTTCTTCGTCAATTGG
CGATCCGGTCATTACCGAAATCCTGACCGCCCTGGGCGAACGCTTCCCGCAGGACAGCTTCATCACGCGGCCGGTCATTG
CCGATGCGGCGCTGGCGGATAGCCTGGATAGCGGCGATCTCGACTGCGCCTTTGTCGTCGATGGCGCCAACGTGCCCGAC
TCGGTCATCCCACATAGCATCATGGCCACGCCGCGACGCCTGATCAGCGTCACGCGCACGGGGTCGATGGACGAAGTGGA
AAGCGACTGGATCCTGCTGCAGGAAGACTGCGACGCCGCAAGTCCCCTACGTGGATTCCTGGAACGCCAGGCCCTTGCTC
CCGGCCATCGCGAAACCGTGGTGCCGTCGTGGCATACCCAGATCACGCTGTTACATGCGGCAGGTGGTATCTGTCCGGTG
CTCGACTTCAACGTGCCGCTCGTCACACGCGATCGGAAGGCGCGCCTGCTGGCGCCACCCAGCAGTTTCCCGGCCTGGGC
CGCGCTTCATTTCTGGATGCCCCAGGAGTCTGATGACCGCAATACGCTCCGCGACATCATGGACGTCGGCGCCTCGGTAT
TGCGAGACCCTCTCAAGGCCATCGACGGACGCCGTCAGGCACGACAACCCGCCAGGCCTCTTGCAGTAGCCTGA

Upstream 100 bases:

>100_bases
CGAATTTCCGCAAGGAGAGCCGGCCGGCAGTCAGAAGCAGTAATGATGTTGCATCACCAGAACAAATAACAAAGTAGAAC
TCGGATCGGGAGAAGTCAGT

Downstream 100 bases:

>100_bases
CCCACACGTATTGATATCAACCGACGACCCCGTGGTGCATCGCGCCACGGGGTCGTTTGCGTTCGATGTCCCCGACGCAA
GGCAATGCAATACGTTTTTT

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator LysR Family; Transcriptional Regulator; LysR Family Transcriptional Regulator; Transcriptional Regulator LysR

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MRHVSTKLLHVFVLLMEYRDLNAVAACTQGRVPTVAYSLARLREITGDALFVKRNGALEPTPHALRLEQTARQILAKWNQ
LVQPSGEHAAQATRGRRISIGFSSSIGDPVITEILTALGERFPQDSFITRPVIADAALADSLDSGDLDCAFVVDGANVPD
SVIPHSIMATPRRLISVTRTGSMDEVESDWILLQEDCDAASPLRGFLERQALAPGHRETVVPSWHTQITLLHAAGGICPV
LDFNVPLVTRDRKARLLAPPSSFPAWAALHFWMPQESDDRNTLRDIMDVGASVLRDPLKAIDGRRQARQPARPLAVA

Sequences:

>Translated_317_residues
MRHVSTKLLHVFVLLMEYRDLNAVAACTQGRVPTVAYSLARLREITGDALFVKRNGALEPTPHALRLEQTARQILAKWNQ
LVQPSGEHAAQATRGRRISIGFSSSIGDPVITEILTALGERFPQDSFITRPVIADAALADSLDSGDLDCAFVVDGANVPD
SVIPHSIMATPRRLISVTRTGSMDEVESDWILLQEDCDAASPLRGFLERQALAPGHRETVVPSWHTQITLLHAAGGICPV
LDFNVPLVTRDRKARLLAPPSSFPAWAALHFWMPQESDDRNTLRDIMDVGASVLRDPLKAIDGRRQARQPARPLAVA
>Mature_317_residues
MRHVSTKLLHVFVLLMEYRDLNAVAACTQGRVPTVAYSLARLREITGDALFVKRNGALEPTPHALRLEQTARQILAKWNQ
LVQPSGEHAAQATRGRRISIGFSSSIGDPVITEILTALGERFPQDSFITRPVIADAALADSLDSGDLDCAFVVDGANVPD
SVIPHSIMATPRRLISVTRTGSMDEVESDWILLQEDCDAASPLRGFLERQALAPGHRETVVPSWHTQITLLHAAGGICPV
LDFNVPLVTRDRKARLLAPPSSFPAWAALHFWMPQESDDRNTLRDIMDVGASVLRDPLKAIDGRRQARQPARPLAVA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34747; Mature: 34747

Theoretical pI: Translated: 7.01; Mature: 7.01

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHVSTKLLHVFVLLMEYRDLNAVAACTQGRVPTVAYSLARLREITGDALFVKRNGALEP
CCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCC
TPHALRLEQTARQILAKWNQLVQPSGEHAAQATRGRRISIGFSSSIGDPVITEILTALGE
CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHH
RFPQDSFITRPVIADAALADSLDSGDLDCAFVVDGANVPDSVIPHSIMATPRRLISVTRT
HCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHCCHHHHHCHHHHHHHHCC
GSMDEVESDWILLQEDCDAASPLRGFLERQALAPGHRETVVPSWHTQITLLHAAGGICPV
CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCEE
LDFNVPLVTRDRKARLLAPPSSFPAWAALHFWMPQESDDRNTLRDIMDVGASVLRDPLKA
EECCCCEEECCCCCEEECCCCCCCHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
IDGRRQARQPARPLAVA
HCCHHHHCCCCCCCCCC
>Mature Secondary Structure
MRHVSTKLLHVFVLLMEYRDLNAVAACTQGRVPTVAYSLARLREITGDALFVKRNGALEP
CCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCC
TPHALRLEQTARQILAKWNQLVQPSGEHAAQATRGRRISIGFSSSIGDPVITEILTALGE
CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHH
RFPQDSFITRPVIADAALADSLDSGDLDCAFVVDGANVPDSVIPHSIMATPRRLISVTRT
HCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHCCHHHHHCHHHHHHHHCC
GSMDEVESDWILLQEDCDAASPLRGFLERQALAPGHRETVVPSWHTQITLLHAAGGICPV
CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCEE
LDFNVPLVTRDRKARLLAPPSSFPAWAALHFWMPQESDDRNTLRDIMDVGASVLRDPLKA
EECCCCEEECCCCCEEECCCCCCCHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
IDGRRQARQPARPLAVA
HCCHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA